PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do019344.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | FAR1 | ||||||||
Protein Properties | Length: 155aa MW: 17246.7 Da PI: 8.6082 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 25.6 | 3.9e-08 | 82 | 150 | 1 | 76 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkw 76 +fY++Y ++GFsvr++k+++ + ++ C+k+g+ + k e + ++++ ++Cka +k k +k +g w Do019344.1 82 EFYKSYTGNAGFSVRITKTRQ-------IVLKMSCNKQGHWNFYKPG-EVRVGEKMSGGCECKAFVKAKWNKkKGYW 150 6***************98665.......47899*******9998888.889999***************99856666 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MTPATAANDH AALQCPAPLV SPALAVNPTR LAVVTPLQSV SPATMATPDP DKTYTHVNPS 60 LPDTIMPNEE LRFDSSDEAE EEFYKSYTGN AGFSVRITKT RQIVLKMSCN KQGHWNFYKP 120 GEVRVGEKMS GGCECKAFVK AKWNKKKGYW FYERI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do019344.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681792.1 | 2e-46 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1E5W3D5 | 1e-114 | A0A1E5W3D5_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | Pavir.Da01755.1.p | 4e-40 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25347 | 2 | 2 |