PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019191.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 435aa    MW: 46831.5 Da    PI: 7.8363
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019191.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.23.7e-10340364227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ktelC+ + r G C+y +rC+FaHg+
  Do019191.1 340 KTELCNKWER-GACPYDGRCRFAHGM 364
                 8*********.*************95 PP
2zf-CCCH185e-06402427126
                 --S---SGGGGTS.--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                 ykt  Cr  ++ G +C+yG rC+F H+
  Do019191.1 402 YKTQVCRMVLA-GvICPYGHRCHFRHS 427
                 899****9999.66**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.7E-15334370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-8338369IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6338364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155338365IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7340364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-5379396IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-10397427IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-7398428IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-5401428IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.713401429IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MEGELGFLSP ARPSRVSSKG GDGHGFGSPT WSSPQGTLLD SPSSCVPEGR GCANGGSGFS  60
SPTWGSPLET LFNSPPSCVS HSRIDGNGSG FSSPTWGSLL EPLFNSSSPC VSDSRGGGNG  120
DGSGSGFSTP KQASPLEMLF DLPSSCVSDS RGGGNSSGFS ASKQASPLET LLDSPSACVS  180
DRRGCGNSSS PRVSMERDSE VQKAERLLRA IIERYDDCFL RLRNATAELA DLRRERVRLG  240
ADNLHLSLLL EELEAAEQSK QASAVALTPS PRPVQAEAAS GCAPKSISIR SKGFLSPKPP  300
QRETQPQRLR VRASPAKEEK EKGDGEVELE LEAYRQGAVK TELCNKWERG ACPYDGRCRF  360
AHGMEELRPV IRMCIRDSPY DGRCRFAHGM EELRPVIRHP RYKTQVCRMV LAGVICPYGH  420
RCHFRHSLPP TAESC
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019191.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0985711e-39AC098571.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B10, complete sequence.
GenBankAC0988321e-39AC098832.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1268_B08, complete sequence.
GenBankAK1063541e-39AK106354.1 Oryza sativa Japonica Group cDNA clone:002-102-A03, full insert sequence.
GenBankAP0149611e-39AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-39CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796553.10.0putative zinc finger CCCH domain-containing protein 21 isoform X2
RefseqXP_025796555.10.0putative zinc finger CCCH domain-containing protein 21 isoform X3
SwissprotQ10MN81e-111C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A1E5V5M70.0A0A1E5V5M7_9POAL; Putative zinc finger CCCH domain-containing protein 21
STRINGPavir.Ib01411.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-30C3H family protein