PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do018333.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 439aa MW: 44427.6 Da PI: 7.1172

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do018333.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.3	7.6e-10	280	327	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq Do018333.1 280 SHSLAERVRRERISERMKMLQSLVPGC----NKITGKALMLDEIINYVQSLQ 327 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.23E-17	274	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.45E-11	274	331	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.0E-17	276	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.694	276	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-7	280	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-10	282	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MADEHFFPGP GDFPSGLGAA PPFFGSSYAP PPPLGLDAAM QGLGLAWADL QMADSSSAAA 60 AATAHFDSAL SSLVSSPAHD GSGCGAGAGD DVAIGDLIGR LGSICSAAAA AVASASNSCY 120 STPLSSPPRG APPSAAAALA FRGCGYPGGA AAAALETAGT GRLSRVASSK SLGAGGAATP 180 ALEQSPEAAE TSPKGTGMRD PAPTAKANGG AARKRKASGK GKATSSAMVC TTAAPFNAKR 240 SKVAAGGGAE GKDDDAAAEE EKAAKDYIHV RARRGQATDS HSLAERVRRE RISERMKMLQ 300 SLVPGCNKIT GKALMLDEII NYVQSLQRQV EFLSMKLATM NPELDADARY QTATAMLACQ 360 YQPATAAADP SFVATAHHAQ QLDYSCAGAF RPDGWELSQD LQSVVARHST AAGAGAVHDH 420 YLLYPSPSSP PAHSSFHGK

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MADEHFFPGP GDFPSGLGAA PPFFGSSYAP PPPLGLDAAM QGLGLAWADL QMADSSSAAA  60
AATAHFDSAL SSLVSSPAHD GSGCGAGAGD DVAIGDLIGR LGSICSAAAA AVASASNSCY  120
STPLSSPPRG APPSAAAALA FRGCGYPGGA AAAALETAGT GRLSRVASSK SLGAGGAATP  180
ALEQSPEAAE TSPKGTGMRD PAPTAKANGG AARKRKASGK GKATSSAMVC TTAAPFNAKR  240
SKVAAGGGAE GKDDDAAAEE EKAAKDYIHV RARRGQATDS HSLAERVRRE RISERMKMLQ  300
SLVPGCNKIT GKALMLDEII NYVQSLQRQV EFLSMKLATM NPELDADARY QTATAMLACQ  360
YQPATAAADP SFVATAHHAQ QLDYSCAGAF RPDGWELSQD LQSVVARHST AAGAGAVHDH  420
YLLYPSPSSP PAHSSFHGK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do018333.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977901.2	1e-157	transcription factor bHLH78
TrEMBL	A0A1E5V7D3	0.0	A0A1E5V7D3_9POAL; Transcription factor bHLH77
STRING	Traes_2BL_FDD7CBAD0.2	1e-109	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12547	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	3e-44	bHLH family protein