PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do016940.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

FAR1

Protein Properties

Length: 1259aa MW: 139302 Da PI: 5.9787

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do016940.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.7	4e-18	990	1074	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA ++GF v+++ks+ + + g + + +vC+k+g+ +e+ + r++ +t+C+a+++ +++ dg ++t+++leHnH+l+p Do016940.1 990 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLVLVCNKWGNGKEDACY-----QARPTAKTNCQATVVARLWGDGMLHLTDVNLEHNHALNP 1074 6***************9998.6777************9999.....999*******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81324	1.83E-5	243	343	No hit	No description
Gene3D	G3DSA:3.40.50.720	2.0E-20	350	494	IPR016040	NAD(P)-binding domain
Pfam	PF06241	1.8E-41	500	598	IPR010420	CASTOR/POLLUX/SYM8 ion channels
Pfam	PF03101	3.5E-16	990	1074	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 1259 aa Download sequence Send to blast
MPLDSDPLSP PPPAQHRDWF FPPAPPFLPS SRARNPRTPF PSTYRSSKPY SAYPLADRRP 60 PPTPRSRSRS PHPPPEQQQH TTPPPSAPRR RDPRYAGVRR DDVRTAASEK AAAPMAAPVH 120 GRKPAASAIT PRWSGMLSVA VILPCLASLL RRNFSLHDQV YHLQEQLAVA TAKLQSCIIG 180 SSLDMSDINF LYQADNITIP NRSLKNFSLL ISLSVLYAPL AILKYIDLVS KIRSSRDSEE 240 VPINKRFAYR VDIFLSLHPY AKPLVLLVAT LLLIALGGLA LYGVTDDSLS DCLWLSWTFV 300 ADSGNHANAV GFGPKLVSVS ISIGGMLVFA MMLGLITDSI SEKFDSLRKG RSEVIEQSHT 360 LILGWSDKLG SLLNQIAIAN ESLGGGTIVV MAERDKEEME ADIAKMEFDL KGTAVICRSG 420 SPLILADLKK VSVSKARAIV VLAEEGNADQ SDARALRTVL SLTGVKEGLR GHIVVELSDI 480 DNEVLVKLVG GDLVETVVAH DVIGRLMIQC ARQPGLAQIW EDILGFENCE FYIKRWPKLD 540 GMQFEDVLIS FPDAVPCGIK VASYGGKIIL NPDDCYVMQE GDEVIVIAED DDTYAPASLP 600 KVRRGYLPKD FVVPKSPERI LFCGWRRDIE DMIMVLDAFL APGSELWMFN DVPEVDRERK 660 LIDGGLDFSR LDNITLVHRE GNAVIRRHLE SLPLESFDSI LILADESVED SAIQADSRSL 720 ATLLLIRDIQ AKRLPYREAM VSHVPRGTFS EGSWIGEMQQ ASDKSVIISE ILDPRTKNLL 780 SMSKISDYVL SNELVSMALA MVAEDRQIND VLEELFAEQG NEMHIRTSDL YLRDEEELNF 840 FEVILRARQR KEIVIGYRLE GAERAIINPT DKVSRRSFHI HNEQSITYVK GLKLLPSVHT 900 EREFIFPVGI MMEVGLNPGE ELDFGGNQED DDEAGDISPG SKELAAMVEA AAAADSVELD 960 DGAAASVAQY GDDRTPRDGM VFKSYEEVLN FYKRYALRTG FGVCVKKSSF TKAGLCRRLV 1020 LVCNKWGNGK EDACYQARPT AKTNCQATVV ARLWGDGMLH LTDVNLEHNH ALNPSAARFL 1080 RCYKTLPSGM SKDLVFLRLV EIGMSSNDKY RHAVRLIKEI KETLLDDNLC RDLEQKLTPA 1140 DRAIVNGDNH TQPGSSEGGP AKKRRGRPPK KSKEISVDSM DSLLVSSDVT QKGAFHSSST 1200 ASNLGTHVRT HGVVDLMEEV NPSELSFDSR YAVQSGHSHH FGQPSALWQT DIIAIGLRV

Sequence ? help Back to Top

Protein Sequence Length: 1259 aa Download sequence Send to blast

MPLDSDPLSP PPPAQHRDWF FPPAPPFLPS SRARNPRTPF PSTYRSSKPY SAYPLADRRP  60
PPTPRSRSRS PHPPPEQQQH TTPPPSAPRR RDPRYAGVRR DDVRTAASEK AAAPMAAPVH  120
GRKPAASAIT PRWSGMLSVA VILPCLASLL RRNFSLHDQV YHLQEQLAVA TAKLQSCIIG  180
SSLDMSDINF LYQADNITIP NRSLKNFSLL ISLSVLYAPL AILKYIDLVS KIRSSRDSEE  240
VPINKRFAYR VDIFLSLHPY AKPLVLLVAT LLLIALGGLA LYGVTDDSLS DCLWLSWTFV  300
ADSGNHANAV GFGPKLVSVS ISIGGMLVFA MMLGLITDSI SEKFDSLRKG RSEVIEQSHT  360
LILGWSDKLG SLLNQIAIAN ESLGGGTIVV MAERDKEEME ADIAKMEFDL KGTAVICRSG  420
SPLILADLKK VSVSKARAIV VLAEEGNADQ SDARALRTVL SLTGVKEGLR GHIVVELSDI  480
DNEVLVKLVG GDLVETVVAH DVIGRLMIQC ARQPGLAQIW EDILGFENCE FYIKRWPKLD  540
GMQFEDVLIS FPDAVPCGIK VASYGGKIIL NPDDCYVMQE GDEVIVIAED DDTYAPASLP  600
KVRRGYLPKD FVVPKSPERI LFCGWRRDIE DMIMVLDAFL APGSELWMFN DVPEVDRERK  660
LIDGGLDFSR LDNITLVHRE GNAVIRRHLE SLPLESFDSI LILADESVED SAIQADSRSL  720
ATLLLIRDIQ AKRLPYREAM VSHVPRGTFS EGSWIGEMQQ ASDKSVIISE ILDPRTKNLL  780
SMSKISDYVL SNELVSMALA MVAEDRQIND VLEELFAEQG NEMHIRTSDL YLRDEEELNF  840
FEVILRARQR KEIVIGYRLE GAERAIINPT DKVSRRSFHI HNEQSITYVK GLKLLPSVHT  900
EREFIFPVGI MMEVGLNPGE ELDFGGNQED DDEAGDISPG SKELAAMVEA AAAADSVELD  960
DGAAASVAQY GDDRTPRDGM VFKSYEEVLN FYKRYALRTG FGVCVKKSSF TKAGLCRRLV  1020
LVCNKWGNGK EDACYQARPT AKTNCQATVV ARLWGDGMLH LTDVNLEHNH ALNPSAARFL  1080
RCYKTLPSGM SKDLVFLRLV EIGMSSNDKY RHAVRLIKEI KETLLDDNLC RDLEQKLTPA  1140
DRAIVNGDNH TQPGSSEGGP AKKRRGRPPK KSKEISVDSM DSLLVSSDVT QKGAFHSSST  1200
ASNLGTHVRT HGVVDLMEEV NPSELSFDSR YAVQSGHSHH FGQPSALWQT DIIAIGLRV

Functional Description ? help Back to Top
Source	Description
UniProt	Required for mycorrhizal symbiosis. {ECO:0000269\|PubMed:18852152, ECO:0000269\|PubMed:18978069}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do016940.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by mycorrhizal colonization. {ECO:0000269\|PubMed:18978069}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793146.1	0.0	probable ion channel CASTOR isoform X1
Swissprot	Q75LD5	0.0	CASTO_ORYSJ; Probable ion channel CASTOR
TrEMBL	A0A1E5VBV0	0.0	A0A1E5VBV0_9POAL; Putative ion channel CASTOR
STRING	Pavir.J00169.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	8e-10	FAR1-related sequence 8

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Banba M, et al. Divergence of evolutionary ways among common sym genes: CASTOR and CCaMK show functional conservation between two symbiosis systems and constitute the root of a common signaling pathway. Plant Cell Physiol., 2008. 49(11): p. 1659-71 [PMID:18852152] Chen C,Fan C,Gao M,Zhu H Antiquity and function of CASTOR and POLLUX, the twin ion channel-encoding genes key to the evolution of root symbioses in plants. Plant Physiol., 2009. 149(1): p. 306-17 [PMID:18978069]