PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015284.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 417aa    MW: 45495.4 Da    PI: 7.3605
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015284.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.7e-31220278259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+
  Do015284.1 220 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 278
                 699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.247214280IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-30217280IPR003657WRKY domain
SuperFamilySSF1182901.96E-26218280IPR003657WRKY domain
SMARTSM007744.3E-38219279IPR003657WRKY domain
PfamPF031069.7E-26221278IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDMAAVAGTA QGDLADVVAR AGAMAPPPPS TSHRAPPPSA AAADHMSSAA MAGQIMLPYE  60
EEPRPASIAC RDAVMFQAPS IVVDPCLSSS ATAPRGGYWL PPQQQLAVQI SQHAACYGHD  120
VATAGDAATD VDGDEAMMRI SPAAHQIMKR KHERQLHIKS FVPERNSMMV YIFLGDLVIL  180
FKRFAYIHIW CRKNEVKKVV CIPALPPTSS RPGGGEVIPS DLWAWRKYGQ KPIKGSPYPR  240
GYYRCSSSKG CMARKQVERS RSDPNMLVIT YTAEHNHPWP MQRNVLAGYS RPHTHTSTNC  300
KKKNNCRVDP TNSTSSTSKN INYYSEHNAV ASGNLECPQT TDMMEGNAAA AAYVAYTVGA  360
LADEEGVAMH QPMSCNSIQQ PAADEVFAEL EELEPSNNPE NNAGIYSRGV SYEWHKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-24193280279Disease resistance protein RRS1
5w3x_D4e-24193280279Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015284.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0687531e-104BT068753.1 Zea mays full-length cDNA clone ZM_BFb0381C04 mRNA, complete cds.
GenBankEU9648151e-104EU964815.1 Zea mays clone 281745 WRKY transcription factor 14 mRNA, complete cds.
GenBankKJ7276131e-104KJ727613.1 Zea mays clone pUT5524 WRKY transcription factor (WRKY10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980994.11e-174probable WRKY transcription factor 14
TrEMBLA0A1E5W4D50.0A0A1E5W4D5_9POAL; Putative WRKY transcription factor 35
STRINGSi038727m1e-174(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-51WRKY DNA-binding protein 35