PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015069.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family LBD
Protein Properties Length: 304aa    MW: 32109 Da    PI: 6.9816
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015069.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.21.7e-304108199
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                 +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+ll+a+p +  r+++++sl+yeA+ r+ +PvyG+vg+++++q+q +q+++e
  Do015069.1   4 SCNGCRVLRKGCSDACTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAAPADSlRPAVFRSLLYEACGRIVNPVYGSVGLLWSGQWQACQAAVE 102
                 6*****************************************************98888**************************************** PP

      DUF260  94 lallke 99 
                 ++l ++
  Do015069.1 103 AVLKGH 108
                 998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.5213110IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-244104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDACT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAAPAD  60
SLRPAVFRSL LYEACGRIVN PVYGSVGLLW SGQWQACQAA VEAVLKGHPV VQVDAGSDAA  120
ALLGARTPAG ASAYDIRHVA KDPDAAAAAD LLRVSRGGRT RFKRAASSST SSKPHHKGKA  180
SNNKRASPRA QHQEPGELEP EPMVVEHDDH RAPSHDEESA GSHDHHLQGS EDTDVEAGSH  240
VSQAEAEPQS HAAPVSSQVL AAAQENEEVG LELTLGFEPA KARSARCDLS AASSLLGLRL  300
ELPA
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015069.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547641e-146EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
GenBankKJ7284041e-146KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817459.11e-142LOB domain-containing protein 40-like
TrEMBLA0A1E5VG320.0A0A1E5VG32_9POAL; LOB domain-containing protein 41
STRINGPavir.Ea01295.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.19e-58LOB domain-containing protein 41