PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do013993.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 363aa    MW: 38353.5 Da    PI: 7.5337
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do013993.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.61.3e-075485337
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfg 37
                y+GV+++++ grW A+I  +s    +k  +lg+f 
  Do013993.1 54 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFS 85
                9***************999754...4*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-55285IPR016177DNA-binding domain
CDDcd000183.21E-1852156No hitNo description
Gene3DG3DSA:3.30.730.106.8E-55386IPR001471AP2/ERF domain
SMARTSM003803.7E-1453160IPR001471AP2/ERF domain
PROSITE profilePS5103213.48553154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-6129154IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-5129155IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
LTAMVKTLHC LALLCLQLED YQEELEEMKN MTRQEYVAHL RRKSSGFSRG ASMYRGVTRH  60
HQHGRWQARI GRVSGNKDLY LGTFSMKCSS ILLFIPSCCS IIDLCIFCIS IHSSTASYSS  120
LTVLLFAGTQ EEAAEAYDIA AIKFRGLNAV TNFDITRYDV DKIMASNTLL PGELARRKKD  180
DEVVQAVADG GGGVTAAALV QQAANANAAA AETWKVAAAA LAAAPRVAVE HGHGGAHHHH  240
HHHHDVMSGA EAFSVLHDLV VTAADGGHHG AAGGGASQHM PMSSASSLVT SLGNSREGSP  300
DRGGGLSMLF SKPPPSAPAQ QQATNKPMSP LMPLGSWASP ASARAAAAVS IAHMPVFAAW  360
TDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo013993.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882636e-88BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803955.11e-135AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ84Z021e-108CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1E5UUK90.0A0A1E5UUK9_9POAL; AP2-like ethylene-responsive transcription factor ANT (Fragment)
STRINGPavir.Ba03911.1.p1e-133(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.12e-54AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]