PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011822.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 605aa    MW: 66743.2 Da    PI: 7.4308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011822.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016372394123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ Cgk  ++ + L  H+r+H
  Do011822.1 372 YQCEVCGKLLRSGYALGCHMRSH 394
                 9*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-6101124IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889101130IPR007087Zinc finger, C2H2
SMARTSM0035514101123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280103125IPR007087Zinc finger, C2H2
PROSITE profilePS501579.203162189IPR007087Zinc finger, C2H2
SMARTSM00355100162184IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.65E-9370394No hitNo description
PfamPF139123.2E-6371396IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.346372399IPR007087Zinc finger, C2H2
SMARTSM003550.13372394IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280374394IPR007087Zinc finger, C2H2
SuperFamilySSF576673.65E-9448475No hitNo description
PfamPF139125.6E-8452475IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307453480IPR007087Zinc finger, C2H2
SMARTSM003550.72453475IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280455477IPR007087Zinc finger, C2H2
PfamPF139121.2E-6535559IPR007087Zinc finger, C2H2
PROSITE profilePS501579.141536563IPR007087Zinc finger, C2H2
SMARTSM003550.23536558IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280538558IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MPCNQLNDDP PVAGHYLARP VFNYLTSMAY SPFPVFSTVL HLHAIPTCVA TRQRRSFQVS  60
SPGFTARPDC ATIIWLSLIM DIDEPRTPKL SDMRPRGPHK HWCKVCTKNF PSGRALGGHM  120
SCHRHSGIQP KSTPIPPVIV VDMPVSLLGP SDEKPSLPSL ETQCLHCSKE FSTCQSLTGN  180
MRMHSETKVI TKLDEEPSGM KEASANSNGD HGHNVMLFSP VKRKRSKRGM PALDSEEMCA  240
AAALLMLAEY SDKTSAYEDC YEGDNDDSIS TPNLLKEVNL NAFGQLVQSD EFTNNTRPKS  300
DKNSAYEGFY ELSEKENSLN LAADVPKKMV LLNVFNHGLV DGEAEFMKPG ADISAEEVKS  360
GNLSVAFNVK RYQCEVCGKL LRSGYALGCH MRSHCEKENS LNLVADVPKK ELLLSAFDHG  420
PDVDAEFMKP GTDNSVEDLK PGDLSAAANI KRHQCKVCGK LLRSGQALGG HMTLHLHRRQ  480
DNTLNLVADV PKKEVLLILS DHGLDVDAEF MKPGADISVE EMKSSDLSAA VNVKRHQCKV  540
CGKLLRSGLA LGGHMRLHYV RKCNLHQGAA DCRPNSALME EQMQKLGLDS PIFYRRRPRS  600
HGSEI
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011822.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681048.10.0uncharacterized protein LOC111256778
TrEMBLA0A1E5WIC50.0A0A1E5WIC5_9POAL; Uncharacterized protein
STRINGPavir.Ca02555.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.13e-10C2H2-like zinc finger protein