PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do010826.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | FAR1 | ||||||||
Protein Properties | Length: 256aa MW: 28225.8 Da PI: 9.9163 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67 | 4.8e-21 | 13 | 98 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+ Y+ +vGF+vrk++ ++sk++geit+r+f Cs+eg+r+++++k + +r gC+a+l v++ k +k ev+ ++ HnH l+ Do010826.1 13 EFYRYYGWKVGFNVRKEYANRSKKTGEITSRKFACSREGRRASHTSK-----ALVPDSRSGCNAHLIVRRPKaGAKLEVYAFQPRHNHLLF 98 6****************************************998777.....89999*************99999*************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-17 | 13 | 98 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGLEFGSEQE AYEFYRYYGW KVGFNVRKEY ANRSKKTGEI TSRKFACSRE GRRASHTSKA 60 LVPDSRSGCN AHLIVRRPKA GAKLEVYAFQ PRHNHLLFAP SFTPCPFLGT AATPDAGSLP 120 DGTESENFLE KSSNARAKES KKGQKNKTQP RNCIEKGLRK KQKVLSEPPS VMYSLSDASA 180 RSENAMFQGL KAPSNMVLVG SQVPAYNASR GVDLSNPMEP INYEGIHPGL SPNFTPELGF 240 VTYHPSLASS DSPQNQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do010826.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072998 | 1e-38 | AK072998.1 Oryza sativa Japonica Group cDNA clone:J023143C23, full insert sequence. | |||
GenBank | AL662944 | 1e-38 | AL662944.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0028I23, complete sequence. | |||
GenBank | AP014960 | 1e-38 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-38 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855155 | 1e-38 | CR855155.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0525E10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022684126.1 | 2e-66 | protein FAR1-RELATED SEQUENCE 7 isoform X2 | ||||
TrEMBL | A0A1E5VTY1 | 0.0 | A0A1E5VTY1_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | OGLUM04G12170.1 | 7e-98 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15895 | 9 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18960.1 | 2e-14 | FAR1-related sequence 12 |