PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do008079.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | HSF | ||||||||
Protein Properties | Length: 384aa MW: 42308.9 Da PI: 6.018 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 100 | 2.2e-31 | 78 | 171 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F+ k+ye++ d++++ l+sw gnsfvv+d++ +a +Lp++Fkh nfaSF+RQLn+YgF+kv+ ++ weF+++sF g+k+ll++ Do008079.1 78 FVAKTYEMVADAATDALVSWApgGAGNSFVVWDPQALAVGLLPRFFKHANFASFIRQLNIYGFRKVNPDR---------WEFANESFLVGQKHLLQN 165 9********************55556*****************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikr++ Do008079.1 166 IKRRRA 171 ***975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.0E-51 | 74 | 169 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 6.4E-33 | 75 | 169 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.25E-30 | 75 | 169 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.5E-17 | 78 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.4E-27 | 78 | 169 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-17 | 118 | 130 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 119 | 143 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-17 | 131 | 143 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MASSSSSSSC PLAPRPSGSK PRPARANGVR LGLGGEATAR GAAAVKREPK PEPWAAEAEL 60 GAVVLPRPVE GPPMPAPFVA KTYEMVADAA TDALVSWAPG GAGNSFVVWD PQALAVGLLP 120 RFFKHANFAS FIRQLNIYGF RKVNPDRWEF ANESFLVGQK HLLQNIKRRR APKPQMDAQQ 180 RNCGSVCFEQ PKESGEVESL KRDRAALRAE VLTLKQQCSS CKSQLVALEE RILNNERNQQ 240 KAIAFFIKVL SNPDFVQKVL LNYAENKGLC SAAKRQRLMK NEEPHVDEPL KNGTKPALAT 300 EANASAASSD DGSVAKHEPM PEWNYQVDNI WDDVWDELDA IPGTEMLQED KAAAGFDVEE 360 FTGWPCGWVD DCPYLVEQMH FVEH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-23 | 71 | 169 | 13 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do008079.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969018.2 | 0.0 | heat stress transcription factor A-6a | ||||
Swissprot | Q657C0 | 1e-156 | HFA6B_ORYSJ; Heat stress transcription factor A-6a | ||||
TrEMBL | A0A2T7DKP3 | 0.0 | A0A2T7DKP3_9POAL; Uncharacterized protein | ||||
STRING | Si004605m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-72 | heat shock transcription factor A2 |
Publications ? help Back to Top | |||
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