PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do007043.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

FAR1

Protein Properties

Length: 488aa MW: 53407.1 Da PI: 7.4993

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do007043.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.4	2.6e-09	27	57	58	88
FAR1 58 trtgCkaklkvkkekdgkwevtkleleHnHe 88 +r+gCka++++kk gkw+vtk++++HnH Do007043.1 27 SRVGCKAMIMIKKFGPGKWMVTKFVKNHNHG 57 79****************************5 PP
2	FAR1	59.8	8.8e-19	102	168	28	90
FAR1 28 itkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++ vCskeg+re ++kk + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH+l+ Do007043.1 102 AKSFYIVCSKEGFREVRTKKvmmdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHSLS 168 4556679***********99999999**********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-7	27	57	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	7.3E-17	102	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MEFESEDAAR DFYSTYARSA GFRIRISRVG CKAMIMIKKF GPGKWMVTKF VKNHNHGPVP 60 PRKLDSRPAN QDCDPMEKSH SIEVEPVEEP FEGMEFESEE AAKSFYIVCS KEGFREVRTK 120 KVMMDEGKTK RPRMITRVGC KAMIVVKKMN SGKWMVSKFE KEHNHSLSYS KMVPITSNIT 180 SGEVADFAAK SADPLDEAIK FAKEGSVTEE IYHVAVSALK EAAEKAKTMS ALQCSDQVEL 240 KTASPGSWPL QESASNLLLV PTNILADSRS YNRVDNVPLS SDLPTNGRQS RQATEGSFMH 300 FENIKETSSQ KSQKASSNQA IHGKDEGIHE PSEETMVAIP AIPLSLCMPV MQNLPGSSSD 360 PVSLICLENI GLRLIEDVQW KLAPSDAYSF SWTADGPYRL LAAPIEAVPI SYRPAEPIRQ 420 PQKGVCALGP FAGVLSELNK RGTGPNSLVH ATALACGARA VPLEEAASLI NAIESKIRSG 480 GAIIAKLP

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MEFESEDAAR DFYSTYARSA GFRIRISRVG CKAMIMIKKF GPGKWMVTKF VKNHNHGPVP  60
PRKLDSRPAN QDCDPMEKSH SIEVEPVEEP FEGMEFESEE AAKSFYIVCS KEGFREVRTK  120
KVMMDEGKTK RPRMITRVGC KAMIVVKKMN SGKWMVSKFE KEHNHSLSYS KMVPITSNIT  180
SGEVADFAAK SADPLDEAIK FAKEGSVTEE IYHVAVSALK EAAEKAKTMS ALQCSDQVEL  240
KTASPGSWPL QESASNLLLV PTNILADSRS YNRVDNVPLS SDLPTNGRQS RQATEGSFMH  300
FENIKETSSQ KSQKASSNQA IHGKDEGIHE PSEETMVAIP AIPLSLCMPV MQNLPGSSSD  360
PVSLICLENI GLRLIEDVQW KLAPSDAYSF SWTADGPYRL LAAPIEAVPI SYRPAEPIRQ  420
PQKGVCALGP FAGVLSELNK RGTGPNSLVH ATALACGARA VPLEEAASLI NAIESKIRSG  480
GAIIAKLP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do007043.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954630	1e-100	EU954630.1 Zea mays clone 1474335 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797822.1	0.0	uncharacterized protein LOC112877680
TrEMBL	A0A1E5UMB2	0.0	A0A1E5UMB2_9POAL; Uncharacterized protein
STRING	Si034492m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-15	FAR1-related sequence 5