PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006714.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HSF
Protein Properties Length: 363aa    MW: 40861.9 Da    PI: 5.6339
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006714.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43.2e-35621532102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++ ++sws+++nsf+v+d++ f + +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++i+
    Do006714.1  62 FLSKTYDMVDDPTTDAIVSWSATNNSFIVWDPNIFGTVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLKNIR 149
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    Do006714.1 150 RRKP 153
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.17E-3658151IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.2E-3958151IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.8E-6258151IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3162151IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-206285IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-20100112IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340101125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-20113125IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MRSAFVVLLL AKVRLLVCSV DGVAMNHSMM NSVKVESRPA VVTANGQPRP IDGLHDGGPP  60
PFLSKTYDMV DDPTTDAIVS WSATNNSFIV WDPNIFGTVL LPRYFKHNNF SSFVRQLNTY  120
GFRKVDPDRW EFANEGFLRG QRHLLKNIRR RKPPHSSPNQ QSLGSYLEVG HFGYDEEIDQ  180
LKRDRQLLMA EVVKLRQEQQ NTKSDLQAME DKLQDTEQKQ QQMMAFMARV MQNPEFMRQL  240
ISQHEMRKGL EDAISKKRRR RIDQGPEADS MGNGSSLEQG SQTMFEPQEP VESLANGVPS  300
DLESSSVEAK GFEVQQGVSS SGSEHLKGRP SGELNDDFWE DLLHEGGLGA EAGNAVGQDD  360
MHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-276015118120Heat shock factor protein 1
5d5u_B5e-276015127129Heat shock factor protein 1
5d5v_B5e-276015127129Heat shock factor protein 1
5d5v_D5e-276015127129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255260KKRRRR
2256261KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006714.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0418770.0BT041877.1 Zea mays full-length cDNA clone ZM_BFb0071P12 mRNA, complete cds.
GenBankBT0884100.0BT088410.1 Zea mays full-length cDNA clone ZM_BFc0182A01 mRNA, complete cds.
GenBankEU9569230.0EU956923.1 Zea mays clone 1577511 heat shock factor protein HSF30 mRNA, complete cds.
GenBankJX4284940.0JX428494.1 Zea mays subsp. mays clone pUT3092 HSF11 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981438.20.0heat stress transcription factor A-2e
SwissprotQ6F3880.0HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLA0A1E5WG110.0A0A1E5WG11_9POAL; Heat stress transcription factor A-2e
STRINGPavir.J01161.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-103heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]