PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005392.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 487aa    MW: 53015.2 Da    PI: 9.0399
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005392.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.62.2e-151151343
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                i+n+s r v + kR +g+ KK +EL +LC+++++v+++++ 
  Do005392.1 11 ISNESTRRVAYKKRSKGLVKKTSELATLCGIKACVVVYGEG 51
                9*************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.53150IPR002100Transcription factor, MADS-box
CDDcd002661.82E-24383No hitNo description
PRINTSPR004042.6E-6323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.18E-19394IPR002100Transcription factor, MADS-box
PfamPF003193.7E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-62338IPR002100Transcription factor, MADS-box
PfamPF131781.0E-7359412IPR025064Domain of unknown function DUF4005
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MPRNKVNLQW ISNESTRRVA YKKRSKGLVK KTSELATLCG IKACVVVYGE GETQPEVWPS  60
VSEATRVLER FKAMPEIGKF KKMQTQEDLI HGRISKLRGQ VCKLDLVNRE HETSRLLHES  120
MEGRRPGLIR TTLEELTNLD RMVETKMAKV KELLQQHVVS HGALPGHPES SSSQQPPQAS  180
YAYTEVMHTT LADMEELQPL QQDWPTDLAP NEGEFGSVVC NGFVSSSNNG CAGPSSYGGP  240
AIQYSSCSLQ ADQRRQAGSA ISVLFFSPVL FLSSRPPLAP PPPLPKSRSP SRCASSSLLD  300
TGSSGGEEWC ANSACSPLPC YLSGGPPQPA RIAVPTSRQF PDYDWSALEK ARPATAQSTP  360
RFLHAHAPAT PAKSVAAYSA SLNGCPNYIS RTQASEAKVR SQSTPKQRPE LACATGGGAR  420
KWVPLSEVVV VESSRASLSG IVGMHRGCSA RAQEAFSFKT VVVGRIDRTL EVAGLEDDRL  480
AFVQRRW
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005392.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5UMN20.0A0A1E5UMN2_9POAL; Uncharacterized protein
STRINGPavir.Eb00487.1.p1e-109(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.23e-26M-type_MADS family protein