PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004812.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-YA
Protein Properties Length: 329aa    MW: 35445.1 Da    PI: 8.4669
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004812.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.21.8e-30164220158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 ++p+YVNaKQy++Il+RR +Rak+e+e++l  k+rkpylheSRh hAlrR+RgsgGrF
  Do004812.1 164 EAPIYVNAKQYEGILRRRRARAKAERENRL-VKARKPYLHESRHLHALRRARGSGGRF 220
                 57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-34162223IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.759163223IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.6E-23166188IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.0E-27166220IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860168188IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.6E-23197220IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MMGFRGHEGF GQVAAGSNGG ASLPWWAPAP QLLLYGEALG QGKVLPEAEP CREVRFQLVP  60
GAQALLDPPV PAPAPTAAAE RGLPEVLKFS VAQGKGDKGS EHSATVALPS PFTIYNGRFE  120
MGLGQSMVSA NNPYADQHYG MLSPYPMAAA PGGCMRIPLN MPSEAPIYVN AKQYEGILRR  180
RRARAKAERE NRLVKARKPY LHESRHLHAL RRARGSGGRF LNTKKEANGK DTGGDGKAMV  240
RNPLTCQVAS PSSEIQQSDL GNPSSISSLS GSEVSSIYDH EDVDHYHSFD HLRTPFFTPL  300
PSIMDGEHGV GNPFKWSTAS EGCCDLLRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-17164226264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004812.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963196.10.0nuclear transcription factor Y subunit A-10
RefseqXP_022680516.10.0nuclear transcription factor Y subunit A-10
TrEMBLA0A1E5UNA30.0A0A1E5UNA3_9POAL; Uncharacterized protein
STRINGSi022607m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.36e-27nuclear factor Y, subunit A10