PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003674.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | FAR1 | ||||||||
Protein Properties | Length: 561aa MW: 63608.3 Da PI: 8.4494 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.8 | 3.2e-22 | 54 | 140 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ +++i +++++Cskeg + +e + +++ +r+ trt+Cka+++ + +++g+w v++++ HnH+la Do003674.1 54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPVHNHQLA 140 7********************9*******************99988..9999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.8E-20 | 54 | 140 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.149 | 322 | 358 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.3E-6 | 328 | 355 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.4E-6 | 333 | 360 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MDSSQDSQEE RHQRRENGEE TEKTADYGNA LSRKEATEEL LGCVVHSEEE AYRLYCDYGH 60 RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV 120 DEKGRWTVIR FVPVHNHQLA KPGERHMLRS AKSLAVGKSG VIDPSASTES HAINGFSDTV 180 EGDTAENSGF RHKWCSAFNK DTFDGGINSS QWGEVSNNIL SGISDENTSL TRFALLLEKV 240 VKDLRRNESE EDFRCSQTAP VRAVKHSTVL KQAAESYTHR IYKLFEAEFL DGCGATSCHE 300 TSSGGNLLRF GITMQGRGSK VWPVALDTST MEITCGCRKF ERMGLLCSHA LKVFTLQNVD 360 TIPEKYVLKR WTKDARRSMY KLAQDDSTQQ ECTEAELAYR NRAMQYAYNL IMKSQELEES 420 RKIFWDSLET GEKALEVFFE MRNMRTQAAK DASNREKKKK KPSKGPNSKK AKQVPAASST 480 GQELIVQTNE HQYQSSQDAQ GNATIGRPYY YQQAFPTAPI QPNQMYMHPN MHTMPLCTPQ 540 DHLSAYAAIR PNSNFGGAKN I |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003674.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014660262.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9 isoform X3 | ||||
Refseq | XP_022680029.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9 isoform X3 | ||||
TrEMBL | A0A1E5WN74 | 0.0 | A0A1E5WN74_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | Si029002m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-23 | FAR1-related sequence 5 |