PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 191aa MW: 21304.3 Da PI: 6.531 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66 | 3.8e-21 | 16 | 59 | 1 | 44 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 krienk rqv fskRr+g++KKA+ELS+LC+a v ++fs+ g Do003610.1 16 KRIENKKARQVCFSKRRQGLFKKASELSILCGAMVGTVVFSEAG 59 79***************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-25 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.708 | 8 | 59 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.68E-24 | 9 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-16 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-23 | 17 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-16 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-16 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MVKPNTSKGK KEVEIKRIEN KKARQVCFSK RRQGLFKKAS ELSILCGAMV GTVVFSEAGS 60 RSFSFGHPSI DDVVNRFLSP VTPDVPASGG ASHDNGGLVT DTVHELNIEY LELEQSLESE 120 KKRKERLQEA IEKEMGEPMM RWLNANILEL GLDELQEFQK KLEEIDGIVK EVNKALVEGR 180 QTPGSHAVPA W |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012699030.1 | 1e-102 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A1E5USG5 | 1e-137 | A0A1E5USG5_9POAL; Uncharacterized protein | ||||
STRING | Si032189m | 1e-101 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-23 | AGAMOUS-like 62 |