PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do002735.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 276aa MW: 29309.8 Da PI: 5.6988 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 64.3 | 2.2e-20 | 79 | 113 | 2 | 36 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaC 36 ++++l+cprC+s +tkfCy+nny+ +qPr++C++C Do002735.1 79 PDAILPCPRCNSVDTKFCYFNNYNEKQPRHYCRNC 113 67899****************************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-14 | 76 | 113 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.7E-18 | 81 | 115 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 16.199 | 83 | 137 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 276 aa Download sequence Send to blast |
MDASRGPDRD QHQDTAIQLF GLSIPVPGSS TPPPPRPHPS TKVADDGGSS QKGKADDPKS 60 EEAKADSGGS GEAKAFQKPD AILPCPRCNS VDTKFCYFNN YNEKQPRHYC RNCPAKEDEA 120 NTSSGSQVVL DLVLGSGDKK EERSCLPSAA VASGSSDNSE VGLSRLSLLP PMMPAPGIRA 180 HAVPFPQVSP LWSCFPGWPN GAWTVLGTTL PSLPPSSVAC SGGDSLALGK HPREEEKAEK 240 TFWVPKALRV TDPEEAAKST IWDSLGIKPD EGTFCK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do002735.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004987428.1 | 3e-72 | cyclic dof factor 2-like, partial | ||||
TrEMBL | A0A1E5UU95 | 0.0 | A0A1E5UU95_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb01147.1.p | 2e-57 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1434 | 38 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62430.1 | 7e-26 | cycling DOF factor 1 |