PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do001401.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | C2H2 | ||||||||
Protein Properties | Length: 200aa MW: 21233.8 Da PI: 8.743 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0014 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C++ F + H+r+H Do001401.1 84 YPCPICHRLFGAVKAVHGHQRSH 106 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.07E-7 | 83 | 154 | No hit | No description |
Pfam | PF13912 | 0.0076 | 84 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.49 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.933 | 84 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.8E-8 | 132 | 156 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.8 | 132 | 154 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.198 | 132 | 159 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 134 | 154 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MNGAQVFFYG VAYGQFLAGA VSSGGSGGGD DSNRPWRPPK SSHEADAAPP VLQRKKRSSS 60 ASHKKQVKDP AAPAPEGEGQ AGPYPCPICH RLFGAVKAVH GHQRSHPERD WRGMAPPRPP 120 PPVAADGRQY RYACDRCGAP FETRQALGGH RASHSGKMGC FWLSRQPAAP AVEPAAAPAP 180 ASIPVFPFDL NEPAVPEEEE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do001401.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967303.1 | 9e-72 | zinc finger protein ZAT3 | ||||
TrEMBL | A0A1E5VRT2 | 1e-141 | A0A1E5VRT2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J33608.1.p | 2e-77 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13010 | 27 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 5e-12 | C2H2-like zinc finger protein |