PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001347.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HSF
Protein Properties Length: 283aa    MW: 30133.4 Da    PI: 5.1768
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001347.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.79e-34181092102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d++++  i w +++nsfvv d+  f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll++i 
    Do001347.1  18 FVAKTYRMVDDPATDAAIAWGRDNNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVSFLRGQTHLLRQIV 105
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r++s
    Do001347.1 106 RRSS 109
                   *997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.4E-5214107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-3214107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.2E-3714107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-2918107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-171841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-175668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-176981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MTTTGGGAGV DAAGMAPFVA KTYRMVDDPA TDAAIAWGRD NNSFVVADPF AFSQTLLPAH  60
FKHSNFSSFV RQLNTYGFRK VDPDRWEFAH VSFLRGQTHL LRQIVRRSSG AGGKQQRKDD  120
DADATVDDDA VAMEVVRLRR EQRAIEDQVA AMWRRVQETE RRPKQMLAFL VKVAGDPQVL  180
RRLVSSSSGA AAGTGGAGSD GGVGLASSGP EDSGREVAKR ARLLLEDGGD GPMVYGGGSS  240
DDAAVDDFVS GFYSASAEDV GFGAEGGGYL QPPPYVFPVN SGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-231810929131Heat shock factor protein 1
5d5v_B2e-231810929131Heat shock factor protein 1
5d5v_D2e-231810929131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001347.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9766691e-169EU976669.1 Zea mays clone 986698 heat shock factor protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799113.11e-134heat stress transcription factor C-2a-like
SwissprotQ6EUG46e-97HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A1E5VEP60.0A0A1E5VEP6_9POAL; Heat stress transcription factor C-2a
STRINGGRMZM2G105348_P011e-117(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-59heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]