PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca12993.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

CAMTA

Protein Properties

Length: 821aa MW: 92961.7 Da PI: 8.3986

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca12993.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	167.6	2.1e-52	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 +e k+rwl+++ei+aiL n++ +++ ++ + pk g++iL++rkk+r+frkDG++w+kkkdgktv+E+he+LKvg+ e +++yYah+e+nptf rrcyw Dca12993.1 30 NEaKSRWLRPNEIHAILSNYTYFTINVKPVNLPKGGKIILFDRKKLRNFRKDGHNWRKKKDGKTVKEAHEHLKVGTEERIHVYYAHGEDNPTFVRRCYW 128 5559********************************************************************************************* PP CG-1 101 lLeeelekivlvhylevk 118 lL+++le+ivlvhy++++ Dca12993.1 129 LLDKSLEHIVLVHYRDTQ 146 *************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.869	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.4E-76	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.1E-46	31	144	IPR005559	CG-1 DNA-binding domain
CDD	cd00204	1.05E-15	457	567	No hit	No description
Gene3D	G3DSA:1.25.40.20	6.8E-17	457	570	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	6.06E-17	458	571	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.486	466	567	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.9E-6	498	571	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.514	508	540	IPR002110	Ankyrin repeat
SMART	SM00248	4.2E-5	508	537	IPR002110	Ankyrin repeat
SMART	SM00248	3200	547	578	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.19E-7	614	720	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	18	669	691	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.126	670	699	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0012	692	714	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.688	693	717	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.5E-4	694	714	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	7.8	773	795	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.572	775	803	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 821 aa Download sequence Send to blast
MENYSSGRLL ASDVHGFHTM EDLDIPTIMN EAKSRWLRPN EIHAILSNYT YFTINVKPVN 60 LPKGGKIILF DRKKLRNFRK DGHNWRKKKD GKTVKEAHEH LKVGTEERIH VYYAHGEDNP 120 TFVRRCYWLL DKSLEHIVLV HYRDTQELQG SPVTPVNLDR SPEISDHSAS QLLSGVSDCQ 180 ANQVSTTSLK EYAGSGDSVN VTNYQMRLHE INTLDWDELL ASNDPIESLL TTKDSAPTAQ 240 QYQQNAAYNL ENNGNGIIIN QSQATILAPR NDRDPVEGSN FAGISPLNDR LLSSVDNLIA 300 QNGDPLQKGG LQSQDSFGRW ISDIIVDSPV SADDPSFESS GVSGHGTFMS SAAVNHEGSV 360 PLQIFCITDI SPSWASSVED TKTRLSHLLF STSKSLDILS SKVSPNALKE GKKFALKYSN 420 IADSWSYFNR LMEDGRISFE RAKDSLFELA MKSRLKEWLL ERVIDGSKVA ERDARGQGVL 480 HLCAILDYTW AVYPYSSCGM SLDFRDKFGW TALHWAAYYG RERMVAALLS AGAKANLVSD 540 PTSENPGGCT PADLAYNQGY EGVAAYLSEK ALIQQFDDMR TAGNVSGFLG TPSEIKPSNI 600 SEDELYLKET LTAYRTAADA AARIQVAFRE RSLKQRAKDV EGNNSEAEAR YIVSALRIQH 660 AYRNYESRKK MAAAAHIQHR FRAWKLRREF LNMRRQAIKI QAVFRGFQVR KQYRKICWSV 720 GVLEKAILRW RLKRKGLRGL EVQIKEPPIE DRSPESDNEE DFYRASRKQA EVRVEKAVVR 780 VQAMFRSRQA QQEYRRMKLA HAQAQQEFDE TTIPYAYMDH I

Sequence ? help Back to Top

Protein Sequence Length: 821 aa Download sequence Send to blast

MENYSSGRLL ASDVHGFHTM EDLDIPTIMN EAKSRWLRPN EIHAILSNYT YFTINVKPVN  60
LPKGGKIILF DRKKLRNFRK DGHNWRKKKD GKTVKEAHEH LKVGTEERIH VYYAHGEDNP  120
TFVRRCYWLL DKSLEHIVLV HYRDTQELQG SPVTPVNLDR SPEISDHSAS QLLSGVSDCQ  180
ANQVSTTSLK EYAGSGDSVN VTNYQMRLHE INTLDWDELL ASNDPIESLL TTKDSAPTAQ  240
QYQQNAAYNL ENNGNGIIIN QSQATILAPR NDRDPVEGSN FAGISPLNDR LLSSVDNLIA  300
QNGDPLQKGG LQSQDSFGRW ISDIIVDSPV SADDPSFESS GVSGHGTFMS SAAVNHEGSV  360
PLQIFCITDI SPSWASSVED TKTRLSHLLF STSKSLDILS SKVSPNALKE GKKFALKYSN  420
IADSWSYFNR LMEDGRISFE RAKDSLFELA MKSRLKEWLL ERVIDGSKVA ERDARGQGVL  480
HLCAILDYTW AVYPYSSCGM SLDFRDKFGW TALHWAAYYG RERMVAALLS AGAKANLVSD  540
PTSENPGGCT PADLAYNQGY EGVAAYLSEK ALIQQFDDMR TAGNVSGFLG TPSEIKPSNI  600
SEDELYLKET LTAYRTAADA AARIQVAFRE RSLKQRAKDV EGNNSEAEAR YIVSALRIQH  660
AYRNYESRKK MAAAAHIQHR FRAWKLRREF LNMRRQAIKI QAVFRGFQVR KQYRKICWSV  720
GVLEKAILRW RLKRKGLRGL EVQIKEPPIE DRSPESDNEE DFYRASRKQA EVRVEKAVVR  780
VQAMFRSRQA QQEYRRMKLA HAQAQQEFDE TTIPYAYMDH I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	88	RKKLRNFRKDGHNWRKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021898630.1	0.0	calmodulin-binding transcription activator 5
Swissprot	O23463	1e-168	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	H8ZRY6	0.0	H8ZRY6_SOLLC; Calmodulin-binding transcription factor SR3L
STRING	evm.model.supercontig_929.1	0.0	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	1e-142	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]