PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_032206
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 308aa    MW: 34014.6 Da    PI: 7.1256
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_032206genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-1194145155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A+ ++k+L+
  DCAR_032206  94 QRMTHIAVERNRRKLMNEHLAVLRSLMPES---YVERGDQASVVGGAITFVKELE 145
                  79****************************...9*****************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1492156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-1192149No hitNo description
Gene3DG3DSA:4.10.280.104.5E-1292149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.10793144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-994145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-899150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAMEALCSNQ VFNLILYDPT PFNNDDVNNN YCPNSSSFPT CPNFLAENPN DYLAASPPKT  60
DNVTAVPIAG APGRKKRRRR SSRVCKNKEE AESQRMTHIA VERNRRKLMN EHLAVLRSLM  120
PESYVERGDQ ASVVGGAITF VKELEHLLQT LEAKKIEQSQ GELCGSASEL MNNPNPFSQF  180
FAFPQYTFCS QMPNKYSRSK SSGGGGGGGG EAEIEVTLIE SHANIRVLCQ RRARQLSKLL  240
SGFHSVYLTL LHLNVTTLDP LVLYSLSAKV EEGCQLKSAD DIAMAVHQML RMIEEDANLS  300
LTQLTNP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379RKKRRRR
27479KKRRRR
394105RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017228765.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T48e-72BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A175YB420.0A0A175YB42_DAUCS; Uncharacterized protein
STRINGXP_009763212.11e-104(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]