PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_032206 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | bHLH | ||||||||
Protein Properties | Length: 308aa MW: 34014.6 Da PI: 7.1256 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.9 | 2.8e-11 | 94 | 145 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ +N+ ++ Lr+l+P++ + ++ + a+++ A+ ++k+L+ DCAR_032206 94 QRMTHIAVERNRRKLMNEHLAVLRSLMPES---YVERGDQASVVGGAITFVKELE 145 79****************************...9*****************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-14 | 92 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.01E-11 | 92 | 149 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.5E-12 | 92 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.107 | 93 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.7E-9 | 94 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-8 | 99 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MAMEALCSNQ VFNLILYDPT PFNNDDVNNN YCPNSSSFPT CPNFLAENPN DYLAASPPKT 60 DNVTAVPIAG APGRKKRRRR SSRVCKNKEE AESQRMTHIA VERNRRKLMN EHLAVLRSLM 120 PESYVERGDQ ASVVGGAITF VKELEHLLQT LEAKKIEQSQ GELCGSASEL MNNPNPFSQF 180 FAFPQYTFCS QMPNKYSRSK SSGGGGGGGG EAEIEVTLIE SHANIRVLCQ RRARQLSKLL 240 SGFHSVYLTL LHLNVTTLDP LVLYSLSAKV EEGCQLKSAD DIAMAVHQML RMIEEDANLS 300 LTQLTNP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 79 | RKKRRRR |
2 | 74 | 79 | KKRRRR |
3 | 94 | 105 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017228765.1 | 0.0 | PREDICTED: transcription factor bHLH94-like | ||||
Swissprot | Q9C7T4 | 8e-72 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A175YB42 | 0.0 | A0A175YB42_DAUCS; Uncharacterized protein | ||||
STRING | XP_009763212.1 | 1e-104 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5632 | 24 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 3e-73 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_032206 |
Publications ? help Back to Top | |||
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