PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029727
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GeBP
Protein Properties Length: 384aa    MW: 42686.9 Da    PI: 4.5398
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029727genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573116.21.9e-3688187197
       DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                  klfqrlw++eDei lLqG++d++ ++g    ++++d++afy+ +k +++++++k+qlveK+rrLKkK+++  +k++sgke +f+++hdq +f++skki
  DCAR_029727  88 KLFQRLWTDEDEIELLQGFLDYTLQRGGhshNSHHDTTAFYDLIKCKLQLDFNKNQLVEKLRRLKKKYRNVLSKINSGKEYVFKTSHDQVTFDISKKI 185
                  579***********************987778889*************************************************************** PP

       DUF573  96 Wg 97 
                  Wg
  DCAR_029727 186 WG 187
                  *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.9E-3390187IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MLIYGADEEE PDEEYDDVDD QNDAVDDEDV DVDDDSISSA DPPPPSAVTI AVAGVLTTPE  60
PKQTADSLAL TVNAERKPLP LPLEESRKLF QRLWTDEDEI ELLQGFLDYT LQRGGHSHNS  120
HHDTTAFYDL IKCKLQLDFN KNQLVEKLRR LKKKYRNVLS KINSGKEYVF KTSHDQVTFD  180
ISKKIWGNVG TVHRELDEDE GNGNLHNLNL PLMNDDNNMN VDGNGDCSGS KAVKSRKRSR  240
ANVKIEEKQI DHTPVLAQPQ PQPQPQPQSV VVPPQAVVTN SLMGSIPNLI EETVRSCLSP  300
LFKELLSNAM SGPRAGGMIN STMTNSMIAP LGIGGAPMNF AGGDMDDKWR KQQILELEVY  360
SKRLELIQDQ IKSQLEELKS MGN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017223981.10.0PREDICTED: uncharacterized protein LOC108200366
TrEMBLA0A175YG580.0A0A175YG58_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000092064e-94(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.16e-68DNA-binding storekeeper protein-related transcriptional regulator