PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028962
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 661aa    MW: 73537.6 Da    PI: 5.94
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028962genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.3e-094254621954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +e+  LA+++gLt +qV++WF N R +
  DCAR_028962 425 FEHflHPYPKDSEKIVLARQTGLTRSQVSNWFINARVR 462
                  664459******************************88 PP
2BELL120.85.7e-39291362172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e++elq+k akLls+l+eV+krYkqy +q+q+v+ssF+++ g g+akpYtslAl++iSr+FrcL+dai +qi
  DCAR_028962 291 EKHELQNKMAKLLSMLDEVNKRYKQYFHQMQIVVSSFDVISGSGAAKPYTSLALQTISRQFRCLRDAINGQI 362
                  689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-55216360IPR006563POX domain
PfamPF075262.8E-47222358IPR006563POX domain
PROSITE profilePS5007112.163403466IPR001356Homeobox domain
SMARTSM003891.3E-9406470IPR001356Homeobox domain
CDDcd000861.50E-12406467No hitNo description
SuperFamilySSF466891.97E-17407473IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-28409472IPR009057Homeodomain-like
PfamPF059202.9E-17423462IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MATYFPNSSN ERDSVPINYL REPLLNSYSE TPVIPGNMMM YMNYPSSSGS YSDTLAGNSQ  60
HQNTSIDLPS VGALHSNLSH QEFMSNLGVS RAGELDLSVW RDGRNEMPLM QTTGGTNNMN  120
SRQNLQGQGL SLSLNPQLSS ELQISSLHGR NPDLGGSSFL SPHTALSGDD IDRHGTFRDD  180
ETYQNRQPRN TEYILPDVLG SSSALLKADV SSFAMQNILR NVPNSKYLKA AQQLLDEVVN  240
VHKALKQHER KKDRVGDCVE ADRASIDGTS ASPAAGQDST SNGPNELSAS EKHELQNKMA  300
KLLSMLDEVN KRYKQYFHQM QIVVSSFDVI SGSGAAKPYT SLALQTISRQ FRCLRDAING  360
QIRVTQVSLR EQDGSAVGIS RLRYVDQQLR QQRALQQLGV MQQHTWRPQR GLPESSVSIL  420
RAWLFEHFLH PYPKDSEKIV LARQTGLTRS QVSNWFINAR VRLWKPMVEE MYKEEAGDAE  480
MECYSSSDIA PNTTKDDTKT YEARGADLQN TATSSSNEKS MIRQFSESRP GHVPDVDMVR  540
SGTQSSFQML NHGETDMNPP RVSVDECNVY ANTMAQPGSE NKYLDAYHVP EFGGFGNGNG  600
VSLTLGLQQR EDGSMPVSVG ADTNFVMMRR EEDYVGFDST DSENRQHRVG SSHLWQDFVA  660
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16412470563Homeobox protein Meis2
3k2a_B4e-16412470563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017227177.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_017227178.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_017227179.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_017227180.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_017227181.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLA0A175YCM20.0A0A175YCM2_DAUCS; Uncharacterized protein
STRINGXP_008236952.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102052226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-120BEL1-like homeodomain 7