PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028946
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family DBB
Protein Properties Length: 245aa    MW: 27618.6 Da    PI: 5.9445
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028946genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.93.5e-07433534
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                  C+ +e+  +++fC  ++  lC+ C ++ H
  DCAR_028946  4 LCDVCESAAAIIFCAADEAALCRACDEKVH 33
                 7**************************998 PP
2zf-B_box26.51.3e-085291237
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                 + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  DCAR_028946 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrkH 91
                 5799**************************9996544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.096147IPR000315B-box-type zinc finger
SMARTSM003362.1E-8147IPR000315B-box-type zinc finger
CDDcd000217.58E-6345No hitNo description
PfamPF006431.5E-5341IPR000315B-box-type zinc finger
PROSITE profilePS501199.1725196IPR000315B-box-type zinc finger
SMARTSM003364.5E-125196IPR000315B-box-type zinc finger
PfamPF006431.2E-65291IPR000315B-box-type zinc finger
CDDcd000212.76E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MRTLCDVCES AAAIIFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLADP SDVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRK HGRYLMLRQR VEFPGDKAGS NDELGLQPID  120
PGESRRESNY PFTFVTRENQ QNQRAENQQN QQNHRAEHQQ NHRVEDQQRR VENQQYHRTA  180
PVPMLDNVDD GGRNMDTSLI DLNARPRNVH GQTSNNQEHG MDIQSGGDHE SESVVPVRSF  240
MRET*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017223800.10.0PREDICTED: B-box zinc finger protein 19-like
SwissprotC0SVM53e-77BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A175YD020.0A0A175YD02_DAUCS; Uncharacterized protein
STRINGEOX978581e-109(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.14e-59DBB family protein