PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028722
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 382aa    MW: 44709.5 Da    PI: 4.2503
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028722genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.77.1e-14145230186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+++e  +L+e+  e+  +l+r++l+  +W ev++k++e  ++ers +qC+++++ l+k+ykk+++ +++   +   ++++f++++
  DCAR_028722 145 EWSEDESFVLLEVWGERFMQLGRRSLRSEDWVEVAEKVSELcKVERSHVQCRNRLDTLKKKYKKERAKMEEM-GGYFGQWVFFKKMD 230
                  5*************************************886478************************9997.666679******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.237138203IPR017877Myb-like domain
PfamPF138377.1E-21144232No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGDSDDDYPQ KHYPSSSSYP SSIRSRRPIH NPNFQTYRDD DDDEDLEDDS NMYRDEEISR  60
KDRNFMKQEE YDEDEDDEDE DGEDGDEDDD DEEYRENGYG GRGYEQNDES KRRQKKRKLE  120
SLVSRYEFAP RTSGSVQKMR EASAEWSEDE SFVLLEVWGE RFMQLGRRSL RSEDWVEVAE  180
KVSELCKVER SHVQCRNRLD TLKKKYKKER AKMEEMGGYF GQWVFFKKMD MLLSVSSRQQ  240
LSGLACGFDS GEYVFMNPKV YLSQSNAFDE MRDSPAESDS DENESDEVEP LRRGDEDGTS  300
FKLLADSIQK FGAIYEKIED KKRQQMMELE RMRMDFQQDL ELKKKQIVER AQAEIEKIRE  360
GNDDDTDSNT DTDVSAGNVS G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117RRQKKRK
2111118RRQKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017223089.10.0PREDICTED: trihelix transcription factor ASIL1-like
RefseqXP_017223090.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A175YJF80.0A0A175YJF8_DAUCS; Uncharacterized protein
STRINGVIT_11s0016g04130.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120602022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.15e-69Trihelix family protein