PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_026953

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

SBP

Protein Properties

Length: 970aa MW: 107847 Da PI: 6.892

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026953	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.4	2.8e-40	150	227	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC+vhska+++lv++++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++ DCAR_026953 150 VCQVEDCRADLSSAKDYHRRHKVCDVHSKANSALVKNVMQRFCQQCSRFHTLQEFDEGKRSCRRRLAGHNRRRRKTHP 227 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.0E-32	145	212	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.12	148	225	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.79E-37	149	229	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.2E-29	151	224	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	3.8E-8	740	847	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	8.49E-8	740	848	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.27E-8	741	849	No hit	No description
PROSITE profile	PS50297	8.587	790	850	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 970 aa Download sequence Send to blast
MEAKLRDKGP QIFGSDAKAV GKKKMEWDLN DWRWDGDMFR AAPLNSNPSD CRGKQLFPSG 60 SGMAPVVNLS NNSSSCSEET TNEREKRELE KRRRVVLVED EEMNDEVGSP SLTLGGQVYP 120 ITTEGDRENW VEKNGKKTKT ADGATPRRPV CQVEDCRADL SSAKDYHRRH KVCDVHSKAN 180 SALVKNVMQR FCQQCSRFHT LQEFDEGKRS CRRRLAGHNR RRRKTHPENA TNAVNSNEEQ 240 SSSYLLISLL RILSNVHSNS SDQTKDNDLL SQLLSSLASR AGTINQSNFH RQPNESQDLQ 300 DAAASIRTQG QSSSRPTGQS SAVPAYGLTQ KQENIDVAHD ENLMAQKSSA LIPMEGGVPA 360 KANLHTSVGR MKLCNIDLNN AYDDTEDCME NMEHFDAPVN VASHQDSHKA SPPQTSGNSG 420 STSTQSPSSS SEELLAWLAN TPTDIESYIR PGCIILTVYL RMENSSWEEL CCDLKSSLRK 480 LLDSSSDSFW KTGWIYTRVR HRIAFAYDGQ VLLDTHIPSE SDKNCKIISV KPLAVSVSEE 540 VKFLVKGYNI SSSNTRFLCA LEGKYLVQQD SSVLMDRDAS LSNHQEEMQS ISFSCSIPEV 600 IGRGFVEVED QSLSSSFFPF IVVEPDVCSE IRTLESIIEA SEAAIGVKGK TEKSEASTVA 660 LDFVHELGWL LHRNQLKFRL GLMDPYQDLF PFKRFRCIME FSLDHGWCAV VKKLLGILFG 720 GTVDAGEHSS VERAVLEIGL LHRAVRQNCR LMVEALLNYR PENVVDKAGS DRKQTVAGHY 780 LFRPDAVGPM GLTPLHIAAG KDGSESVLDA LTDDPQSVGI EAWKNSRDST GLTPYDYACQ 840 RGHHSYIHIV QTKIKKKSEN RQVVIDIPSS LLDFNKNSKA ADDLKSTKVG SLETEKYAMK 900 LAQKQCGLCD QKLVYGNFRT SLAFCRPALL SMVAIAAVCV CVALLFKSSP EVLYVFQPFR 960 WELVKYGSS*

Sequence ? help Back to Top

Protein Sequence Length: 970 aa Download sequence Send to blast

MEAKLRDKGP QIFGSDAKAV GKKKMEWDLN DWRWDGDMFR AAPLNSNPSD CRGKQLFPSG  60
SGMAPVVNLS NNSSSCSEET TNEREKRELE KRRRVVLVED EEMNDEVGSP SLTLGGQVYP  120
ITTEGDRENW VEKNGKKTKT ADGATPRRPV CQVEDCRADL SSAKDYHRRH KVCDVHSKAN  180
SALVKNVMQR FCQQCSRFHT LQEFDEGKRS CRRRLAGHNR RRRKTHPENA TNAVNSNEEQ  240
SSSYLLISLL RILSNVHSNS SDQTKDNDLL SQLLSSLASR AGTINQSNFH RQPNESQDLQ  300
DAAASIRTQG QSSSRPTGQS SAVPAYGLTQ KQENIDVAHD ENLMAQKSSA LIPMEGGVPA  360
KANLHTSVGR MKLCNIDLNN AYDDTEDCME NMEHFDAPVN VASHQDSHKA SPPQTSGNSG  420
STSTQSPSSS SEELLAWLAN TPTDIESYIR PGCIILTVYL RMENSSWEEL CCDLKSSLRK  480
LLDSSSDSFW KTGWIYTRVR HRIAFAYDGQ VLLDTHIPSE SDKNCKIISV KPLAVSVSEE  540
VKFLVKGYNI SSSNTRFLCA LEGKYLVQQD SSVLMDRDAS LSNHQEEMQS ISFSCSIPEV  600
IGRGFVEVED QSLSSSFFPF IVVEPDVCSE IRTLESIIEA SEAAIGVKGK TEKSEASTVA  660
LDFVHELGWL LHRNQLKFRL GLMDPYQDLF PFKRFRCIME FSLDHGWCAV VKKLLGILFG  720
GTVDAGEHSS VERAVLEIGL LHRAVRQNCR LMVEALLNYR PENVVDKAGS DRKQTVAGHY  780
LFRPDAVGPM GLTPLHIAAG KDGSESVLDA LTDDPQSVGI EAWKNSRDST GLTPYDYACQ  840
RGHHSYIHIV QTKIKKKSEN RQVVIDIPSS LLDFNKNSKA ADDLKSTKVG SLETEKYAMK  900
LAQKQCGLCD QKLVYGNFRT SLAFCRPALL SMVAIAAVCV CVALLFKSSP EVLYVFQPFR  960
WELVKYGSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	150	224	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	94	KRRRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017222623.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
TrEMBL	A0A175YPT3	0.0	A0A175YPT3_DAUCS; Uncharacterized protein
STRING	VIT_05s0020g00700.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Link Out ? help Back to Top
Phytozome	DCAR_026953