PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_026717 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 187aa MW: 20618.1 Da PI: 10.2458 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 94.1 | 9.6e-30 | 24 | 115 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+ tpsdv+k++rlv+pk++ae+h g+ +++ l +ed+ g++W+++++ + +s++ vltkGW++Fvk++gL++gD+v F++++ ++ DCAR_026717 24 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqHGN--KGVLLNFEDSGGKVWRFRYSSWTSSQSNVLTKGWNRFVKEKGLNAGDIVSFYRSNGVDR 115 89*************************986444..789*************************************************7655554 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-39 | 15 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.05E-30 | 19 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.68E-28 | 22 | 112 | No hit | No description |
Pfam | PF02362 | 2.1E-27 | 24 | 118 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.6E-20 | 24 | 123 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.353 | 24 | 123 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
MIDHKSAVAA ELAASSRGSR EHLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLQHGNKGVL 60 LNFEDSGGKV WRFRYSSWTS SQSNVLTKGW NRFVKEKGLN AGDIVSFYRS NGVDRQLYIA 120 TESGIGSGSG ENVESEVHPV QAVEPVRLFG VNIFRVPQVE VDNYGNRNRN IEISNSGKKI 180 RVSNAL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-52 | 21 | 127 | 11 | 120 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017222040.1 | 1e-120 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like, partial | ||||
Swissprot | P82280 | 2e-56 | RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
TrEMBL | A0A175YRS1 | 1e-133 | A0A175YRS1_DAUCS; Uncharacterized protein | ||||
STRING | EOY02136 | 4e-63 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2958 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68840.2 | 9e-59 | related to ABI3/VP1 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_026717 |