PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026683
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family YABBY
Protein Properties Length: 178aa    MW: 19887.8 Da    PI: 9.3993
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026683genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY129.83.5e-4041574166
        YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                  ++  e++Cyv+C++Cn +l + +P + ++++vtv+CG C +l  ++       + ++ +  + +l    +  l ++++ l+   +k+++++ + ss k
  DCAR_026683   4 VQPYEHLCYVRCTYCNIVLEIRIPCKRMLETVTVKCGQCCNLSYLTAVPPPpVQSPSLDS-SATL----QSSLCSDSKRLQ---KKKKNKQLHCSSPK 93 
                  56789************************************9876654443144555554.3333....333333333332...23333333333322 PP

        YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166
                    ++++ +++++p v++PPe++ r Psaynrf++eeiqrika+nP+i hr+afsaa+knWa    i
  DCAR_026683  94 --HESSSSSSNAPFVVKPPERKHRPPSAYNRFMREEIQRIKAANPNIPHRDAFSAASKNWARCSSI 157
                  ..333445556678***********************************************87666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.7E-467157IPR006780YABBY protein
SuperFamilySSF470952.49E-10100155IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.0E-6108155IPR009071High mobility group box domain
CDDcd013907.53E-8115155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDPVQPYEHL CYVRCTYCNI VLEIRIPCKR MLETVTVKCG QCCNLSYLTA VPPPPVQSPS  60
LDSSATLQSS LCSDSKRLQK KKKNKQLHCS SPKHESSSSS SNAPFVVKPP ERKHRPPSAY  120
NRFMREEIQR IKAANPNIPH RDAFSAASKN WARCSSITNM PLFTTISESS NNVCTKE*
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222290.11e-127PREDICTED: protein DROOPING LEAF
SwissprotQ76EJ04e-54YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A175YQI61e-126A0A175YQI6_DAUCS; Uncharacterized protein
STRINGGorai.005G146700.11e-55(Gossypium raimondii)
STRINGVIT_01s0011g00140.t018e-56(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52102339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-46YABBY family protein