PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_025842
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 319aa    MW: 35817.8 Da    PI: 7.086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_025842genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12134180455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h  +Er+RR++i +++  L  ++P +     kK++Ka++Le A++Y+k+L+
  DCAR_025842 134 DHILAERKRRENISQRLIALSAIIPGL-----KKMDKASVLESATKYVKQLE 180
                  5889***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.716130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-15134193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.18E-12135184No hitNo description
SuperFamilySSF474591.96E-15135192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10135180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-12136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MELSSYARCF PELGMDDCNN FNHLMQNDDY HHTYAATNTH SQHLSSFSSE IIQTGIPAAN  60
RHPRGVNMGG SAQPAGSHQF EWVLKPKDEE IVYNDELMLS FPSSFNWKSG GTSSSISNKR  120
KQYLFPSAPL TAKDHILAER KRRENISQRL IALSAIIPGL KKMDKASVLE SATKYVKQLE  180
ERIRSLEEEV KKKKSLESVV LVRKSQISGS EEGSCCDDDQ NCLELSAGTT DHQGLPEIEI  240
RKSDKIILIK IFCEKYKNFL PKLLAEVEKL HLTVLNSIAL PFGSYAMDIT ISAQMDAEFC  300
LSRKDLIRNL HSTFNGFI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143ERKRRE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017217415.10.0PREDICTED: transcription factor bHLH19-like
SwissprotQ9T0722e-48BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A164UE270.0A0A164UE27_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-41bHLH family protein