PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_025687

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 230aa MW: 24152.9 Da PI: 8.0802

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_025687	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.1	9.1e-39	25	84	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprCdstntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++PvGgg+rkn k+s DCAR_025687 25 PEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDIPVGGGSRKNAKRS 84 57899***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.1E-33	27	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.208	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-24	32	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0009751	Biological Process	response to salicylic acid
GO:0042545	Biological Process	cell wall modification
GO:0045787	Biological Process	positive regulation of cell cycle
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MPPETSDHRR STKPQQLGGA PPPEPEHLPC PRCDSTNTKF CYYNNYNFSQ PRHFCKACRR 60 YWTHGGTLRD IPVGGGSRKN AKRSRPSSSI FATSGQDYRH LPAAATPIFL PLSGGDHGGS 120 LPFMSDVKQG YNMCGSFTSL LNQGPGLLSL GGFGLGIGHH GFEDMGFGLG RASVWPFAGV 180 GDGGDNGGGG GGHVMGNTWQ LESGESGFGS GDCFTLPDLA ISTPGNAMK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00402	DAP	Transfer from AT3G50410	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017216310.1	1e-167	PREDICTED: dof zinc finger protein DOF3.4-like
Swissprot	Q39088	7e-57	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A161ZMM4	1e-166	A0A161ZMM4_DAUCS; Uncharacterized protein
STRING	XP_009591716.1	6e-85	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4532	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	7e-49	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	DCAR_025687

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]