PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_025398 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | WRKY | ||||||||
Protein Properties | Length: 504aa MW: 55376.5 Da PI: 7.64 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.2 | 1.2e-31 | 230 | 286 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK+vk se+prsYY+Ct+a+Cpvkkkve+s +++v+eitY+g+Hnhe DCAR_025398 230 ADGYNWRKYGQKQVKASEYPRSYYKCTYANCPVKKKVECSP-NGQVTEITYKGQHNHE 286 5****************************************.***************7 PP | |||||||
2 | WRKY | 103.6 | 1.1e-32 | 396 | 454 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++dpk+v++ Yeg+Hnh+ DCAR_025398 396 LDDGFKWRKYGQKVVKGNQNPRSYYKCTYAGCNVRKHVERASTDPKAVITSYEGKHNHD 454 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.6E-28 | 217 | 288 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-24 | 226 | 288 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.3E-33 | 229 | 287 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.366 | 231 | 288 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-24 | 231 | 286 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.8E-35 | 381 | 456 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-28 | 388 | 456 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.162 | 391 | 456 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-37 | 396 | 455 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-25 | 397 | 454 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MGEAEEALAT QARPSFTLNL PPRPSMEALF SGGPGLSPGP MTLVSNFFNE YYPDSDNCSF 60 SQLLAGAMAS PVAKTSQLSG KDMKSEDGSD KKSGFKQNRP MNLVVAQSPL FMMPPGLSPS 120 GFLNSPGFFS PLQSPFGMSH QQALAHVTAQ AALSQSQSFK HIQADSQLPS LLPASAETVT 180 HPSSSSELFF TQQMHDAKLE PENSKIDSPD ISNFERKSVS TSLCTDKPGA DGYNWRKYGQ 240 KQVKASEYPR SYYKCTYANC PVKKKVECSP NGQVTEITYK GQHNHELPLS NKRTKGGSDR 300 SRAVNAEAKV EPAFIGQTES SRSEETVPYH AVPTDQLSTQ LVPQQSHELT NDEEGYDAEP 360 RVNENIEVGT QELPISHRAV TESRIVVQTR SEVDLLDDGF KWRKYGQKVV KGNQNPRSYY 420 KCTYAGCNVR KHVERASTDP KAVITSYEGK HNHDTPTSRN SSHNSNNANA NQSRPARVGT 480 TKKPVHNDMD FETSQSPFLL QLK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-36 | 231 | 456 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-36 | 231 | 456 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017219234.1 | 0.0 | PREDICTED: probable WRKY transcription factor 3 | ||||
Swissprot | Q9XI90 | 1e-125 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | A0A161X7A2 | 0.0 | A0A161X7A2_DAUCS; Uncharacterized protein | ||||
STRING | VIT_14s0108g01280.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4314 | 23 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-120 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_025398 |
Publications ? help Back to Top | |||
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