PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_025335 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 92aa MW: 10992.7 Da PI: 9.8896 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.3 | 7.1e-10 | 25 | 63 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 lFe+ ++yp+ +++ LAk++ L+ +qV++WF N R + DCAR_025335 25 LFEQflHPYPKDSDKHMLAKQTILSRSQVSNWFINARVR 63 6887779******************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.548 | 4 | 67 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-28 | 6 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.17E-10 | 7 | 68 | No hit | No description |
SMART | SM00389 | 4.2E-6 | 7 | 71 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.08E-16 | 8 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.7E-17 | 24 | 63 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 92 aa Download sequence Send to blast |
MIQHNAWRPQ RQLPKRSVSV LRAWLFEQFL HPYPKDSDKH MLAKQTILSR SQVSNWFINA 60 RVRLWKPMVE EMYTEGELFC YYTNQEAPPV V* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 8e-16 | 13 | 71 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 8e-16 | 13 | 71 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 8e-16 | 13 | 71 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 8e-16 | 13 | 71 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011042587.1 | 2e-44 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_011042589.1 | 2e-44 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_011042590.1 | 2e-44 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_011042591.1 | 2e-44 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_011042592.1 | 2e-44 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_011042593.1 | 2e-44 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SW80 | 1e-37 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | A0A161ZPE5 | 3e-62 | A0A161ZPE5_DAUCS; Uncharacterized protein | ||||
STRING | GLYMA03G36070.1 | 2e-43 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1478 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36870.2 | 5e-40 | BEL1-like homeodomain 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_025335 |
Publications ? help Back to Top | |||
---|---|---|---|
|