PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_024888
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 427aa    MW: 46842.2 Da    PI: 8.576
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_024888genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3451.9e-14339420179
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                  f+k+lt sd++k grlvlpkk+ae +  ++++ e++ l ++d++g++W +++++  +++s++yvl+ G   + ++ +L++gD+
  DCAR_024888 339 FEKTLTASDAGKIGRLVLPKKCAEVYlpSISNSEGIPLLVQDLKGQEWVFQFRFwpNNNSRMYVLE-GVIPYIQSMQLRAGDT 420
                  99*********************999**666678889***************9989999999***9.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-17336420IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-22336420IPR015300DNA-binding pseudobarrel domain
CDDcd100172.20E-18337420No hitNo description
SMARTSM010199.9E-6339424IPR003340B3 DNA binding domain
PROSITE profilePS508639.375339426IPR003340B3 DNA binding domain
PfamPF023621.6E-11339420IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MASLSCSLPK LCFNSNCNQL LHHNSRRGWR RRTGDFADLC DRCATAFEEG NFCESFHLNA  60
SGWRSCETCG KKIHCGCIVS SHMFVLLDAG GIECITCTNK SHVLTPNPAW PPPSLILPVL  120
PERVKDLSVT NWSSIAASGP KPCRQAPTFF DQDLHPKMPV EVDISTGINR HIGSKKLTNS  180
PIEKRNNLDA SGRLVNGSLK HGASLLLENG TSVSKCDEQP SAYGNDKPLS AVSKDETSSP  240
HIHLAHNHAS KSKTGDHFKV SVSYAQRSTP PTAAVKNFGS PNGVGSSGES RTCNERPQGR  300
NQLLPRYWPK ITDKELQQMS GEYPNFLYVS TNCVITPLFE KTLTASDAGK IGRLVLPKKC  360
AEVYLPSISN SEGIPLLVQD LKGQEWVFQF RFWPNNNSRM YVLEGVIPYI QSMQLRAGDT  420
GKTSIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-483094202105B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017219150.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like
TrEMBLA0A164TNW80.0A0A164TNW8_DAUCS; Uncharacterized protein
STRINGXP_006467887.11e-154(Citrus sinensis)
STRINGXP_006449227.11e-154(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71282126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.15e-85VP1/ABI3-like 3