PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_023976 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | B3 | ||||||||
Protein Properties | Length: 897aa MW: 98501.9 Da PI: 6.7688 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.5 | 2.4e-18 | 329 | 429 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+l+ sd+++ grlvlpk +ae++ ++++e++ ++++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++l++ DCAR_023976 329 FEKILSASDAGRIGRLVLPKACAEAYfpPISQPEGIPVRIQDVKGEEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLLM 424 99**************************666778899***************9989999999***9.********************876.8888888 PP EEE-S CS B3 95 kvfrk 99 +++++ DCAR_023976 425 GFRKA 429 88765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-28 | 321 | 429 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-19 | 326 | 428 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.00E-22 | 327 | 428 | No hit | No description |
Pfam | PF02362 | 1.0E-15 | 329 | 429 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-20 | 329 | 430 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.955 | 329 | 430 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 897 aa Download sequence Send to blast |
MGSKVCMNGL CGATFGDGKR GWPLRSGGFA VLCHSCWTLY EQLAFCDMFH SDDSGWRECI 60 SCGKRLHCGC VASSSLLEIL DSSGVICIRC AKGSGDQPKG FESPTGFGTS VEKYVGETHF 120 ASTDNQINVD CIHGINLKQF NNLADGDGPK QFLPSQDGNI VGSHCQMKQE GSIPPSADTG 180 ITCFSNFGRL SAGSSYDAKT KVCEGKEYSD VKDIYGSAVQ TNLTISLATP SLIQHSSPTA 240 VCEVVKSTKT VSSFQSESRT SHVLPKASQP DVTERLDPNA NMISPIRVAR PPVEGRIKNQ 300 LLPRYWPRIT EQELQKISGD SNSTIIPLFE KILSASDAGR IGRLVLPKAC AEAYFPPISQ 360 PEGIPVRIQD VKGEEWVFQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRMDPEG 420 KLLMGFRKAS NNLMQDTHFS GKHTGSFASE PFLSGVIENL PAMSGYSGLL QSMSGGTDPH 480 LKVFSKNLSS SSGDVIWHVT DKPGGKRIID SLPPTLLAPE KKRSRNIGLK SKRLLIENQD 540 ALELKLTWEE VQEMLQPPAS VRPTTVTVED HEFEEYEGPP VLGKRSIFTV RSTGEQEQWT 600 TCDGCSKWRR CSCSAPDELS PWELEQLFKL NNDFKRRRIT VFDQMSTHNH DSNFPGVLAS 660 SSVQGEVTDL GATAVATTTK HPRHRPGCSC IVCIQPPSGK GKHKPTCTCN VCMTVKRRFK 720 TLMLRKKKRQ SDREAEIAQR NQFLWGPKEE VEVDSTSQGR RLLNLSENGS RSGSEPQAYD 780 ERNNQVDRAI NANTDKLDLN FQPNSGEDLP IKSTQVSMIS LVQVATRPLE MYLKQNGLTS 840 LIPEQQTSSG SHVPPQDITE SEGHPHQDQS LAQEDPPGSD DKVSEAGQTG TNLDQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-66 | 307 | 431 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 634 | 638 | KRRRI |
2 | 715 | 726 | KRRFKTLMLRKK |
3 | 715 | 728 | KRRFKTLMLRKKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017218546.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X2 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A161ZIU8 | 0.0 | A0A161ZIU8_DAUCS; Uncharacterized protein | ||||
STRING | EOY04456 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_023976 |
Publications ? help Back to Top | |||
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