PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_023571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HSF | ||||||||
Protein Properties | Length: 56aa MW: 6168.85 Da PI: 3.7928 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 39.6 | 1.4e-12 | 12 | 53 | 2 | 43 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk 43 Fl+klye+++de+++ lisw ++++sfv++d ef++ +Lp+ DCAR_023571 12 FLTKLYEMVDDETTDGLISWGSRNDSFVIWDDVEFSTVLLPN 53 9************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.5E-13 | 4 | 53 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.42E-12 | 8 | 52 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.5E-9 | 12 | 53 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 56 aa Download sequence Send to blast |
MGKKTAGDVA PFLTKLYEMV DDETTDGLIS WGSRNDSFVI WDDVEFSTVL LPNNE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017215745.1 | 3e-29 | PREDICTED: heat stress transcription factor A-8-like | ||||
Swissprot | Q94BZ5 | 2e-11 | HSFA5_ARATH; Heat stress transcription factor A-5 | ||||
TrEMBL | A0A161WQ37 | 5e-32 | A0A161WQ37_DAUCS; Uncharacterized protein | ||||
STRING | XP_006469269.1 | 3e-14 | (Citrus sinensis) | ||||
STRING | XP_006448138.1 | 3e-14 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA572 | 24 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-13 | heat shock factor 3 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_023571 |
Publications ? help Back to Top | |||
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