PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_022499

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 381aa MW: 42318.5 Da PI: 6.9341

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_022499	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.1	2e-05	276	310	15	54
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +++ L++l+ + +K + a++L +A+eYIk L DCAR_022499 276 KMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 310 6778999999999998.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.50E-6	259	314	No hit	No description
SuperFamily	SSF47459	1.44E-11	260	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.411	261	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-4	267	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-9	275	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MDDEEFQIGS GNWSQLSKNS RRSSSSPPTP PSTHVWPIQV VDVTKQPLHQ DHPNLQYMTG 60 LGLASQPVEW NQPSLFRGGI EKSDENFSFR SMLQEDHDHS RSTTTSFQQA EQPWMPRSQK 120 LVSYSSSSSA TADSEAVFSS LNLSQFTSTT HHHHLNPNNI DHSFSPYPTS YGTNSSSSSG 180 RDHRQFIFQP NSLQAPNNKP PNQLHLSNKA PFWNASPAAP IINHDVRSNL FPSLQMQSPS 240 STFDEKPKES SSSETSNKRP RNETPSPLAA KPKKEKMGDR ITALQQLVSP FGKTDTASVL 300 SEAIEYIKFL HEQVGVLSNA YMKSGAPIQQ QKCEKSSDEE GQQQDLRSRG LCLVPVSSTF 360 PVTHETTVDF WNPTFGGSFR *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MDDEEFQIGS GNWSQLSKNS RRSSSSPPTP PSTHVWPIQV VDVTKQPLHQ DHPNLQYMTG  60
LGLASQPVEW NQPSLFRGGI EKSDENFSFR SMLQEDHDHS RSTTTSFQQA EQPWMPRSQK  120
LVSYSSSSSA TADSEAVFSS LNLSQFTSTT HHHHLNPNNI DHSFSPYPTS YGTNSSSSSG  180
RDHRQFIFQP NSLQAPNNKP PNQLHLSNKA PFWNASPAAP IINHDVRSNL FPSLQMQSPS  240
STFDEKPKES SSSETSNKRP RNETPSPLAA KPKKEKMGDR ITALQQLVSP FGKTDTASVL  300
SEAIEYIKFL HEQVGVLSNA YMKSGAPIQQ QKCEKSSDEE GQQQDLRSRG LCLVPVSSTF  360
PVTHETTVDF WNPTFGGSFR *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017255617.1	0.0	PREDICTED: transcription factor bHLH123-like
TrEMBL	A0A164VCL0	0.0	A0A164VCL0_DAUCS; Uncharacterized protein
STRING	EOY12661	2e-86	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	7e-57	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_022499