PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022454
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 376aa    MW: 42549.8 Da    PI: 6.5244
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022454genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-092963331954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +e+  LA+++gL+++qV++WF N R +
  DCAR_022454 296 FEHflHPYPNDSEKLVLASQTGLSKNQVSNWFINARVR 333
                  664459******************************88 PP
2BELL93.71.7e-30167235472
         BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +l++k +kL+slleeV++ ++qy++ ++ v+ssFe++ag g+ k+Yt+l l+a+SrhF +Lkdai+ qi
  DCAR_022454 167 QLEAKLSKLISLLEEVERTFEQYYHHMEEVVSSFEVIAGSGAGKSYTALTLQAMSRHFCSLKDAIIYQI 235
                  789***************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-2797233IPR006563POX domain
PfamPF075269.8E-35103231IPR006563POX domain
PROSITE profilePS5007111.936274337IPR001356Homeobox domain
CDDcd000866.72E-10277338No hitNo description
SMARTSM003897.3E-9277341IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-26282343IPR009057Homeodomain-like
SuperFamilySSF466892.78E-17283344IPR009057Homeodomain-like
PfamPF059209.1E-17294333IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MTESRSAEQS NFGFFLQYYY MHTERKREAE PLRGSWMLLP PTQYRQRPMT SSLMSPAYSC  60
NPAVDRASND YSVSGSSLAS SLPSQYQLSF NFGGTTESYM LAVGESKYLK PAQSLLEEAV  120
SVGGRSIQAS NEEYIKRLSP ADKKGSLGLW SELRSDLFNN ASSLDKQLEA KLSKLISLLE  180
EVERTFEQYY HHMEEVVSSF EVIAGSGAGK SYTALTLQAM SRHFCSLKDA IIYQIGATRR  240
KHMPKINMGL SQLSLSDQEN RVSLQQLGMI HSTRQTWRPI RGLPENSVTI LRSWLFEHFL  300
HPYPNDSEKL VLASQTGLSK NQVSNWFINA RVRLWKPMIE EMYKEEFADD SINPAQESNS  360
TSNERITFDA EESSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-15283341563Homeobox protein Meis2
4xrm_B1e-15283341563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255149.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD15e-93BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A164VDG10.0A0A164VDG1_DAUCS; Uncharacterized protein
STRINGVIT_18s0001g13130.t011e-138(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86022228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.15e-95BEL1-like homeodomain 11