PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021919
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 328aa    MW: 36557.5 Da    PI: 7.7108
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021919genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.8e-13157204355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  DCAR_021919 157 QDHIMAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYLKQLQ 204
                  6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.113154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17158216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17158220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.41E-13159208No hitNo description
SMARTSM003534.5E-15160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEVSQITGLT ELGMDDSFFN NQWPMSSYDE LSALSLAAAF GENLHSNFAQ PMYDMRPSSE  60
TSFTISERPM KQLKTNSWSS ETNDHIPNMQ QFSYANYNNQ IGIVKPKEEA LSSRSTTTTL  120
GTDVITSQGS FENQNYVLKS SQGAKRISTN ARLSQAQDHI MAERKRREKL SQRFIALSAL  180
VPGLKKMDKA SVLGDAIKYL KQLQERVKAL EEQTRRKSTE SVAFANNSSS DNHAAGIPAE  240
EPLPEIEVRI SDRDILIRIH CEKRKGVIEK TLAEIEKFQL SIINSTAMTF GASTLDITII  300
AQMDAKFTMT AKDLVKDLLV ALKKIMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14158207857Transcription factor MYC2
5gnj_B3e-14158207857Transcription factor MYC2
5gnj_E3e-14158207857Transcription factor MYC2
5gnj_F3e-14158207857Transcription factor MYC2
5gnj_G3e-14158207857Transcription factor MYC2
5gnj_I3e-14158207857Transcription factor MYC2
5gnj_M3e-14158207857Transcription factor MYC2
5gnj_N3e-14158207857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167ERKRRE
2163168RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255148.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0729e-57BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A164VQT50.0A0A164VQT5_DAUCS; Uncharacterized protein
STRINGVIT_03s0088g01240.t011e-133(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-56bHLH family protein