PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020993
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family SBP
Protein Properties Length: 175aa    MW: 19705.2 Da    PI: 8.865
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020993genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP116.21.7e-3660135177
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                  +Cqve+C +dls+ k y+rrhkvC+ h+ka vv ++g++qrfCqqCsrfhel+efD++krsCrrrLa+hnerrrk +
  DCAR_020993  60 RCQVESCCVDLSDEK-YYRRHKVCQLHAKALVVGLAGKQQRFCQQCSRFHELTEFDNAKRSCRRRLAGHNERRRKCS 135
                  6***********975.99********************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-3057121IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.63E-3358137IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.35958134IPR004333Transcription factor, SBP-box
PfamPF031104.9E-2961133IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MTSKIHSKPA DNNNLPSITL AFTDVEEGED VSSLGFEKGS CRKKESVFLN AAYGNVVPPR  60
CQVESCCVDL SDEKYYRRHK VCQLHAKALV VGLAGKQQRF CQQCSRFHEL TEFDNAKRSC  120
RRRLAGHNER RRKCSSESHK EGSNSQLKDG HRQADERGSA LLEKPSSEKY LRIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-30611331184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258067.11e-126PREDICTED: squamosa promoter-binding protein 1-like
RefseqXP_017258068.11e-126PREDICTED: squamosa promoter-binding protein 1-like
SwissprotQ387401e-35SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBLA0A161ZUL41e-125A0A161ZUL4_DAUCS; Uncharacterized protein
STRINGXP_010260271.14e-41(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.19e-38squamosa promoter binding protein-like 5
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]