PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_019332

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 325aa MW: 36831.5 Da PI: 4.7019

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_019332	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.7	3.1e-11	158	201	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk +K++ +iL +++Y+++L DCAR_019332 158 LMAERRRRKRLNDRLSMLRSVVPKI-----TKMDRTSILGDTIDYMNEL 201 589*******************7.....6************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.85	152	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.43E-5	154	206	No hit	No description
SuperFamily	SSF47459	2.62E-15	156	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-9	157	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.6E-12	158	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-15	158	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	8.13E-5	250	288	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEYSGHDLLE ELLSLRTDPW DFATNFPLEM NDFYNNIAAC SNFDHFLENP FLDTTQPFCF 60 EEFSSFPFDQ QSLNVSSTFN VSFGNEIATS VPQLTYDSSS FNTPSYVPLE EEYSSRAVAN 120 SCKVELTQSP ELPVFNQGVC SEKKTKGKRL NGEQSKNLMA ERRRRKRLND RLSMLRSVVP 180 KITKMDRTSI LGDTIDYMNE LLQRIKNLQE EMNPNQHELT SASILKNVKP NEVLVRNSPK 240 FDVERRNVDT RIEICCAAKP GLLLSTVTTL EALGLDIQHC VISCFNDFGM QASCSEEMDQ 300 RGDISPEDMK QALFRNAGYG GRCL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	167	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017250341.1	0.0	PREDICTED: transcription factor bHLH93-like
Swissprot	Q9LSL1	2e-76	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A162A6E7	0.0	A0A162A6E7_DAUCS; Uncharacterized protein
STRING	EOY15558	1e-119	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-78	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	DCAR_019332

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]