PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_019123

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

MYB

Protein Properties

Length: 1180aa MW: 130130 Da PI: 8.6283

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_019123	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	835	876	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT E e++++ + +G++ +++Ia+ + ++t +c+++++k DCAR_019123 835 PWTSKEKEIFLNRLTTFGKD-FRKIASFLE-RKTTADCIEFYYK 876 8***************99.*****.*********98 PP
2	Myb_DNA-binding	32.7	1.7e-10	1048	1088	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT eE +++av +G++ +k+I++++ R+ qck ++ DCAR_019123 1048 NWTDEEKSVFIQAVMSYGKD-FKKISQYVR-SRSSDQCKVFFS 1088 8***************99.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.48E-12	821	879	IPR009057	Homeodomain-like
PROSITE profile	PS51293	16.043	831	882	IPR017884	SANT domain
SMART	SM00717	8.5E-8	832	880	IPR001005	SANT/Myb domain
CDD	cd00167	3.79E-6	835	877	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-4	835	886	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.364	1044	1095	IPR017884	SANT domain
SuperFamily	SSF46689	2.99E-11	1045	1095	IPR009057	Homeodomain-like
SMART	SM00717	5.1E-9	1045	1093	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-7	1046	1089	IPR009057	Homeodomain-like
CDD	cd00167	1.52E-7	1048	1087	No hit	No description
Pfam	PF00249	7.4E-9	1048	1088	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1180 aa Download sequence Send to blast
MLGPSRPNKR FFNDGRCLQI DKYGRDSSRV ISGESFSQRD RRGHYWDSAP GRRSNGHASM 60 PAHAIVKSSA DDMMAYNSYP HSKIGNNWGQ FYFKDQHYNN SVASGQNTRR RFGRKNSAGL 120 NGRKALKWTR SGSLHSHGCG FSHSGSSGSV GLDSGKIKAT SNFQNPSPVH SLSGNSATCA 180 FTAPEETNSR GGGIRHSSSP KRLHLNSSAC ATSAGALETN LSGCGYSHSS IPKICGSDSD 240 EIKVPVHSQN STSGSSFSEK AVSCAAYAPT QETNSRKRPR IGWGKGLAQF EKIINGSTDT 300 AENDGTIESP HSHSKNCTES VHPHNSVMAP RCSRVQCFTE CRSPVTHSHA FCSSPGEDNL 360 SVKALEVDTS NLCSPPGQEY KNRRDDFNLE NLEVTGLATL SSSISEILQF DNLHSAESDC 420 MRSCEISKLL VLKDDIAKKV EITESEIDLL ENELRTLISA SGNASPCSTS SSLLPVKCIL 480 KPSEKLCATS NLNARPAPLG HSCSEDMMQM PLGGLEGELA ESRNVDIDSL GTTTSQVAES 540 LLAGTLFSEK THRYDESTWK ADEDREGKSI VYSVKEENSG AIFTKQFASR GCMLSVDVKF 600 QKEHMFYDLL IASNQDFARR SAKVFSKLLP TNLLGVDHLS FNVTPCWKKK ALVRENLALR 660 KRFLRFKERV LSLKFIALKR LWKEDLLRLF TSKSCPMSQK KMDLSSPVVY CSNPKEGSSI 720 RARFSSRELH GSGFPKSSLI ISFAAAYEPE EVELDPDSEI ICMSCRSLSL VPTADTINFA 780 SKLLEDSRIK AYSSALKMPS LILDDKEKKA SRFISSNRLV EDPSTAEKER GMFTPWTSKE 840 KEIFLNRLTT FGKDFRKIAS FLERKTTADC IEFYYKNQKS DCFRGTKKKT EFPEQGKYCS 900 TFLVTAGKRR ASISSKASLD MLGAASLIVH HVNDKLTDQQ KCPRNVFGKC TPKTWSDHEI 960 CKKSSSPSIL GNEKDCVAAD LLAGICDSFL SKTMTSCITS SMDFGEKYQE RKSLQLGSSV 1020 KRQLTSESTN NANEACSDES FGEIDSTNWT DEEKSVFIQA VMSYGKDFKK ISQYVRSRSS 1080 DQCKVFFSKA RKCLRLDTVM HSNQHIPASD DAKGGGGSDN GNACAVETIC NGKSGSRIAE 1140 DQLSSNFKEF FFGSQPARTT KMQPDYEHLE QKQIKKVGR*

Sequence ? help Back to Top

Protein Sequence Length: 1180 aa Download sequence Send to blast

MLGPSRPNKR FFNDGRCLQI DKYGRDSSRV ISGESFSQRD RRGHYWDSAP GRRSNGHASM  60
PAHAIVKSSA DDMMAYNSYP HSKIGNNWGQ FYFKDQHYNN SVASGQNTRR RFGRKNSAGL  120
NGRKALKWTR SGSLHSHGCG FSHSGSSGSV GLDSGKIKAT SNFQNPSPVH SLSGNSATCA  180
FTAPEETNSR GGGIRHSSSP KRLHLNSSAC ATSAGALETN LSGCGYSHSS IPKICGSDSD  240
EIKVPVHSQN STSGSSFSEK AVSCAAYAPT QETNSRKRPR IGWGKGLAQF EKIINGSTDT  300
AENDGTIESP HSHSKNCTES VHPHNSVMAP RCSRVQCFTE CRSPVTHSHA FCSSPGEDNL  360
SVKALEVDTS NLCSPPGQEY KNRRDDFNLE NLEVTGLATL SSSISEILQF DNLHSAESDC  420
MRSCEISKLL VLKDDIAKKV EITESEIDLL ENELRTLISA SGNASPCSTS SSLLPVKCIL  480
KPSEKLCATS NLNARPAPLG HSCSEDMMQM PLGGLEGELA ESRNVDIDSL GTTTSQVAES  540
LLAGTLFSEK THRYDESTWK ADEDREGKSI VYSVKEENSG AIFTKQFASR GCMLSVDVKF  600
QKEHMFYDLL IASNQDFARR SAKVFSKLLP TNLLGVDHLS FNVTPCWKKK ALVRENLALR  660
KRFLRFKERV LSLKFIALKR LWKEDLLRLF TSKSCPMSQK KMDLSSPVVY CSNPKEGSSI  720
RARFSSRELH GSGFPKSSLI ISFAAAYEPE EVELDPDSEI ICMSCRSLSL VPTADTINFA  780
SKLLEDSRIK AYSSALKMPS LILDDKEKKA SRFISSNRLV EDPSTAEKER GMFTPWTSKE  840
KEIFLNRLTT FGKDFRKIAS FLERKTTADC IEFYYKNQKS DCFRGTKKKT EFPEQGKYCS  900
TFLVTAGKRR ASISSKASLD MLGAASLIVH HVNDKLTDQQ KCPRNVFGKC TPKTWSDHEI  960
CKKSSSPSIL GNEKDCVAAD LLAGICDSFL SKTMTSCITS SMDFGEKYQE RKSLQLGSSV  1020
KRQLTSESTN NANEACSDES FGEIDSTNWT DEEKSVFIQA VMSYGKDFKK ISQYVRSRSS  1080
DQCKVFFSKA RKCLRLDTVM HSNQHIPASD DAKGGGGSDN GNACAVETIC NGKSGSRIAE  1140
DQLSSNFKEF FFGSQPARTT KMQPDYEHLE QKQIKKVGR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ148044	1e-157	FJ148044.1 Daucus carota subsp. sativus clone BAC C145F08 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017253174.1	0.0	PREDICTED: uncharacterized protein LOC108223425 isoform X1
TrEMBL	A0A164ZG79	0.0	A0A164ZG79_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5904	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-101	MYB family protein

Link Out ? help Back to Top
Phytozome	DCAR_019123