PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014815
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family RAV
Protein Properties Length: 325aa    MW: 37506.2 Da    PI: 8.933
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014815genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.87.5e-102370255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 ++kGV     +g W A+I+       + +r++lg+f +++eAa a++ a+ kl++
  DCAR_014815 23 RFKGVVALL-NGHWGAQIYA------NhQRIWLGTFNSENEAAMAYDSAAIKLRN 70
                 667776444.799****999......44*************************97 PP
2B379.34.1e-25146237183
                  EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  f+k+ltpsdv++++rlv+pkk+a ++           g+    + +l+++d+s r+W+++++y+k+s++yv+t+GW+eFv++++Lk +D v+F 
  DCAR_014815 146 FEKELTPSDVGSLNRLVIPKKHAVTYfprlsrgneasGE--IDDLQLVFYDSSMRQWRFRYCYWKSSQSYVFTRGWNEFVREKKLKYKDRVIFF 237
                  99*****************************87775432..35668****************************************99988874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.37E-192280No hitNo description
SuperFamilySSF541712.62E-142280IPR016177DNA-binding domain
SMARTSM003802.6E-152384IPR001471AP2/ERF domain
PROSITE profilePS5103215.9092378IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-142378IPR001471AP2/ERF domain
PfamPF008475.0E-62370IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.6E-31144238IPR015300DNA-binding pseudobarrel domain
CDDcd100176.29E-23144249No hitNo description
SuperFamilySSF1019362.35E-26145238IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.4E-16146255IPR003340B3 DNA binding domain
PfamPF023621.5E-22146237IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97146263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MERKASLIRT KRARSDNNTY SSRFKGVVAL LNGHWGAQIY ANHQRIWLGT FNSENEAAMA  60
YDSAAIKLRN YDSHRNFSWS SINAEEPKFQ RQFSTEEVIC MIKDGSYPSK FSDYLKLRGQ  120
SKDSESGELN FSVEQKKGEF LCSKLFEKEL TPSDVGSLNR LVIPKKHAVT YFPRLSRGNE  180
ASGEIDDLQL VFYDSSMRQW RFRYCYWKSS QSYVFTRGWN EFVREKKLKY KDRVIFFTYS  240
YVGATDKLVQ KCLMIDVAYY SDSVVDETSD DLERSMHFGQ ENVELQKNGV DNDAEKNADK  300
VLLKSKGAAD EQKIGFKLFG VQII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2514523613100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245604.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P52e-96RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A165X0B40.0A0A165X0B4_DAUCS; Uncharacterized protein
STRINGVIT_11s0037g00010.t011e-103(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.18e-99RAV family protein