PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_013864

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 363aa MW: 38873.9 Da PI: 8.7189

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_013864	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	119	141	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 CpdCg++F+ ++L+ H+ + H DCAR_013864 119 ACPDCGEVFPKIESLELHQAVrH 141 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	118	141	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.621	118	146	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	8.34E-24	143	359	No hit	No description
Gene3D	G3DSA:3.90.228.10	4.7E-10	145	359	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MGPNQELAHL QTTGSSICTF RDVAHGNTSR VVHRADNSPE SSSVGQETGL IRRKTVNGSS 60 STRSNMSSAN SVRSNGGGSC RSSSRGMQFR KLSGCYECHM AHMIVDPSRY PTPRTTVCAC 120 PDCGEVFPKI ESLELHQAVR HAVSELGPED SGRNIVEIIF KSSWLKKDSP ICTIERILKV 180 HNTKRTIQKF EDCRDAVKFR ATTTAKRDPR CAADGNELLR FHCTSLTCTL GAHGSSSLCG 240 SVPGCGVCTV IRHGFQGRKL GADNKGVRTT ASSGRAHDCL NSTDTRRAML VCRVIAGRVK 300 RSEDDVAMEE GNAAAAAALN PSGSAYDSVA GLGGVFSNLE ELHVANPRAI LPCFVVIYKT 360 SI*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MGPNQELAHL QTTGSSICTF RDVAHGNTSR VVHRADNSPE SSSVGQETGL IRRKTVNGSS  60
STRSNMSSAN SVRSNGGGSC RSSSRGMQFR KLSGCYECHM AHMIVDPSRY PTPRTTVCAC  120
PDCGEVFPKI ESLELHQAVR HAVSELGPED SGRNIVEIIF KSSWLKKDSP ICTIERILKV  180
HNTKRTIQKF EDCRDAVKFR ATTTAKRDPR CAADGNELLR FHCTSLTCTL GAHGSSSLCG  240
SVPGCGVCTV IRHGFQGRKL GADNKGVRTT ASSGRAHDCL NSTDTRRAML VCRVIAGRVK  300
RSEDDVAMEE GNAAAAAALN PSGSAYDSVA GLGGVFSNLE ELHVANPRAI LPCFVVIYKT  360
SI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT149606	1e-39	BT149606.1 Medicago truncatula clone JCVI-FLMt-20P4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017244124.1	0.0	PREDICTED: uncharacterized protein LOC108215990
TrEMBL	A0A165Y2M1	0.0	A0A165Y2M1_DAUCS; Uncharacterized protein
STRING	XP_006473648.1	1e-177	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5195	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-142	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	DCAR_013864