PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013580
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 393aa    MW: 44037 Da    PI: 7.1482
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013580genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05224243120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C k+F+r  n++ H+
  DCAR_013580 224 FSCPVCYKTFNRYNNMQMHM 243
                  89*****************9 PP
2zf-C2H214.30.00012308330123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk F  + + ++H +++
  DCAR_013580 308 FMCRKCGKAFAVRGDWRTHEKNC 330
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.61E-5220246No hitNo description
SMARTSM003550.45224246IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743224251IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.0E-6224243IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280226246IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-6289328No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5304328IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549308328IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808308328IPR007087Zinc finger, C2H2
SMARTSM00355150334357IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MTDPYSHPYP QWFRFNPPPP PHHHTYFYSS QNHPPQPPLN NYMFYKTNPP PPTPTPTPTS  60
PPLREALPLL TLSPMRKPDQ EITTAAQIPQ IPSSSCSTSG LDLNMIPTYM DVDEYKKSSR  120
EARDDIDEDV DENDEQVTVA LQIGLPNPSP ADMAAYNMHH LLTTSNCSSS SNTNSTTSAG  180
HLSANCCYSS NNSSHNTSSG SGGMHISKYW IPTPSQILIG PTQFSCPVCY KTFNRYNNMQ  240
MHMWGHGSQY RKGPESLRGT QPTGMLKLPC YCCAPGCRNN IDHPRSKPLK DFRTLQTHYK  300
RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIKAFGHGHA  360
SYGGGFEEED DDPASEVEQD DDDDNDQSSS LQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244916.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-131ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A165YGE80.0A0A165YGE8_DAUCS; Uncharacterized protein
STRINGVIT_08s0007g08070.t011e-145(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-120C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]