PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012788
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 341aa    MW: 38849.8 Da    PI: 6.8061
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012788genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-0592115123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  y+C+ Cg+ ++++ +Lk+H ++ H
  DCAR_012788  92 YVCGVCGRKCKTNLDLKKHFKNlH 115
                  9******************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.6E-61265IPR029060PIN domain-like
PROSITE profilePS5015710.67992120IPR007087Zinc finger, C2H2
SMARTSM003550.008692115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094115IPR007087Zinc finger, C2H2
CDDcd061673.28E-10111246No hitNo description
Gene3DG3DSA:3.40.50.10101.6E-6167242IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MVRTRDGVYT AKPQKVVILW DLDNKPPRGP PYNAAISLKT LAQRFGEVVD FSAYANRHAF  60
VHLPQWVINE RRERKNRDLL EKKGVIRPSE MYVCGVCGRK CKTNLDLKKH FKNLHERERQ  120
KKLNRMKGLK GKKRQKFKER HISGNVKYME AAKTLITPKS GYGLAGELRR AGVYVKTVED  180
KPQAADWAVK RQMLHSMSRG VDWIVLVSDD SDFREMLRKA REGNLGTVVV GDVDRALGSI  240
ADLWVSWVGV QNGEVSDDDL VPRRRSEGEV VDEGTGGGGF PGERDLDSVL DELVGVRSKF  300
NELSFEEEES AGFNFDNDSE EEDDDFLWDS EDDELERDYR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244111.10.0PREDICTED: uncharacterized protein LOC108215978
TrEMBLA0A162AEX50.0A0A162AEX5_DAUCS; Uncharacterized protein
STRINGXP_008452587.11e-160(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122681518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-137C2H2-like zinc finger protein