PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_012077

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

HSF

Protein Properties

Length: 313aa MW: 35411 Da PI: 5.2993

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012077	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	106.9	1.6e-33	13	105	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k+y++++d+++++li+w + +nsf+v+++ +f++++Lp +Fkh+nf+SF+RQLn+YgFkkv+ ++ weF++++F +g+++ l++i DCAR_012077 13 FVVKTYQMVNDPTTDNLITWGRANNSFIVVNPLDFSQRLLPVFFKHNNFSSFIRQLNTYGFKKVDPDR---------WEFANEWFLRGQTQILKNIA 100 9******************999*************************************999.........****************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 rk+++ DCAR_012077 101 RKRHN 105 *9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.7E-50	9	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	3.2E-35	10	102	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.18E-32	10	102	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	4.8E-28	13	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.0E-17	13	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.0E-17	51	63	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	52	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.0E-17	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MDVAEDNNVI APFVVKTYQM VNDPTTDNLI TWGRANNSFI VVNPLDFSQR LLPVFFKHNN 60 FSSFIRQLNT YGFKKVDPDR WEFANEWFLR GQTQILKNIA RKRHNKSGLY PLNKYDEEEE 120 EDLLTEISRL KQEQKILDLE VEGMTKRLEA TERRPQQMMA FLYKVVEDPE IISRMMLDKD 180 RTRRIGEKKR RLMTISSSTN SSHSSSEMMA TTSLKSEEEE ERATVGSMSS SEGSFDGHSP 240 SSETVLPAWL MGQRRQLRMM ETQPLVAQAA YNGGGYAGVS PPVDGGGGGD MSFFAGNSSL 300 LPYPFSLLGG EF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-23	3	102	20	129	Heat shock factor protein 1
5d5v_B	2e-23	3	102	20	129	Heat shock factor protein 1
5d5v_D	2e-23	3	102	20	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00379	DAP	Transfer from AT3G24520	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017238092.1	0.0	PREDICTED: heat stress transcription factor C-1-like
Swissprot	Q9LV52	7e-85	HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBL	A0A166C5P8	0.0	A0A166C5P8_DAUCS; Uncharacterized protein
STRING	VIT_11s0016g03940.t01	1e-114	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6832	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	6e-82	heat shock transcription factor C1

Link Out ? help Back to Top
Phytozome	DCAR_012077

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guan Q,Yue X,Zeng H,Zhu J The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771]