PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_010936 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Dof | ||||||||
Protein Properties | Length: 226aa MW: 24235 Da PI: 8.5962 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122 | 2.1e-38 | 23 | 82 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprCdstntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++PvGgg+rk+ k+s DCAR_010936 23 PEHLRCPRCDSTNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDIPVGGGTRKSAKRS 82 57899**************************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-25 | 19 | 75 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.6E-33 | 25 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.854 | 26 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 28 | 64 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MPSETSVQRP TKPTQVGAPP PEPEHLRCPR CDSTNTKFCY YNNYNFSQPR HFCKACRRYW 60 THGGTLRDIP VGGGTRKSAK RSRSSSSSSL FSDHEYRHMP TPTTPFFLPL SNGDHNGVSV 120 PFVNNGKPCY NNMAGSFTSL LGTQAPGLLS LNGFGLGLGS HGFEDVGFGL GRNVWAFPPV 180 GPGGVTESVG GNTWQVESGE NGFTNVDTTF SLPDLAISTP GNAMK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269|PubMed:10758484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017238755.1 | 1e-166 | PREDICTED: dof zinc finger protein DOF3.4-like | ||||
Swissprot | Q39088 | 6e-51 | DOF34_ARATH; Dof zinc finger protein DOF3.4 | ||||
TrEMBL | A0A166B0A7 | 1e-164 | A0A166B0A7_DAUCS; Uncharacterized protein | ||||
STRING | Migut.H00486.1.p | 4e-75 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4532 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 7e-42 | OBF binding protein 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_010936 |
Publications ? help Back to Top | |||
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