PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009927
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 397aa    MW: 42976 Da    PI: 9.3155
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009927genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011167188323
                  ETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                  C+ Cg+ F++ ++L+ H+ + H
  DCAR_009927 167 CSECGEIFPNTESLELHQAVkH 188
                  99****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.787165193IPR007087Zinc finger, C2H2
PROSITE patternPS000280165188IPR007087Zinc finger, C2H2
SuperFamilySSF563996.71E-23190393No hitNo description
Gene3DG3DSA:3.90.228.101.7E-11191393IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MALLTSTPET KKQKPSSKRR KHQSSWNQIK NLLTCKQIQT STSVHDPSKT NMNTITGAYL  60
KLGHCKSMCS FKDVVHGNTR VVHRPDHSPE NSSVGQETGL LGHKNHGVSL SSSSRSLASN  120
ASVRSNGGSF SASSRGMQLR KLSGCYECHM IVDPTRYSIP RTTICGCSEC GEIFPNTESL  180
ELHQAVKHAV SELGPEDSGR NIVEIIFKSS WLKKDSPYCN IERILKVRNT KRTIQRFEDC  240
RDAVKLRATS HTRKNPRCAA DGNELLRFHC TSLTCTLGAR GGSTLCGALP GCGVCTIIRH  300
GFRGTCFGEG QSGVHTTASS GRAHDCLGGS EMRRAMLVCR VIAGKVKTAA EDDGVAAASY  360
DSFVGKAGVY SSTEELYVCN PKAILPCFVV IYKALI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238745.10.0PREDICTED: uncharacterized protein LOC108211613 isoform X2
TrEMBLA0A162AHK40.0A0A162AHK4_DAUCS; Uncharacterized protein
STRINGVIT_18s0001g14130.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51952334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-152C2H2-like zinc finger protein