PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009235
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Dof
Protein Properties Length: 370aa    MW: 39053.9 Da    PI: 9.3696
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009235genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.61.3e-3868127362
       zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  e+a+kcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+ss
  DCAR_009235  68 ETAQKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSS 127
                  6789*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-3551123IPR003851Zinc finger, Dof-type
PfamPF027015.5E-3270125IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.24571125IPR003851Zinc finger, Dof-type
PROSITE patternPS01361073109IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGFSTISAYL DPANWQQQPN NYQTNASLPP SIPAPPPLPQ LHGGSGAGSI RPGSMTDRAR  60
MANIPMPETA QKCPRCESTN TKFCYFNNYS LTQPRHFCKT CRRYWTRGGA LRNVPVGGGC  120
RRNKRSSKTS SGNASKSPSR SETASGSTSS ALPPNTSTAT SFLGSLTSQF PQLRFMAPMS  180
STTHLNDQYG EIGMNYSANE MNFPIGSTSN YLFGGGGGGG LASVLSSGGS GVEQWRMQQG  240
GNHHFPNFLG GFDPTVTSQQ GLVYQGGGVE VASSGGGGYA AMADKFLNNS MLSQMALVKR  300
EGNNANANNN NNNSINRDDD HQTNLARQFL GSAGQVGISD HQQQWNPSGG TPAWTDLSGF  360
SSSSTSNAL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00295DAPTransfer from AT2G37590Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1499353e-83FJ149935.1 Daucus carota subsp. sativus clone BAC C075A06 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017240443.10.0PREDICTED: dof zinc finger protein DOF2.4
TrEMBLA0A162AG900.0A0A162AG90_DAUCS; Uncharacterized protein
STRINGVIT_08s0007g00180.t012e-82(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19172463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.12e-47DNA binding with one finger 2.4