PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008701 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | B3 | ||||||||
Protein Properties | Length: 242aa MW: 27114.9 Da PI: 7.7469 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.7 | 4.3e-13 | 156 | 238 | 1 | 79 |
EEEE-..-HHHHT.T-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDf 79 f+k lt sdv + +rlv+pkk+ae++ + ++ + ++d++g++W +k++y+ +s++ yvl+ G +++ +a + ++gD+ DCAR_008701 156 FEKMLTASDVDHKlARLVIPKKYAEAYfpvvTAP--QGGPVEFQDTDGKEWVFKFRYWPCSSSrtYVLE-GLRDYMSAMKGQVGDM 238 899******99877**************976433..4446*****************777766658888.*********9999995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 151 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.68E-16 | 153 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.17E-16 | 154 | 238 | No hit | No description |
Pfam | PF02362 | 4.0E-10 | 156 | 238 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0034 | 156 | 241 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.783 | 157 | 241 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MATSSSSKTS CFQCEDSISD SFKHGWRLRS GDVARLCNRC GSVYEDGRFC ETFHSNDDGW 60 RDCESCGKLV HCGCVVSYNA YLLLDFGGVI CMDCSKRNFI TARNRCLSLE SQAGTANLSI 120 DFGKKIHVEP CNLPWVNNTE LQQISRKPRS IITPLFEKML TASDVDHKLA RLVIPKKYAE 180 AYFPVVTAPQ GGPVEFQDTD GKEWVFKFRY WPCSSSRTYV LEGLRDYMSA MKGQVGDMGK 240 I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-27 | 134 | 237 | 2 | 104 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017238618.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X2 | ||||
TrEMBL | A0A165ZET6 | 0.0 | A0A165ZET6_DAUCS; Uncharacterized protein | ||||
STRING | Migut.H01903.1.p | 1e-81 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12994 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21550.1 | 3e-30 | VP1/ABI3-like 3 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008701 |